Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGA1P17096 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.7■□□□□ 0.74
HMGA1P17096 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HMGA1P17096 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGA1P17096 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 AL109659.2-201ENST00000606809 1674 ntBASIC19.69■□□□□ 0.74
HMGA1P17096 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGA1P17096 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 RASA4DP-201ENST00000460726 1199 ntBASIC19.69■□□□□ 0.74
HMGA1P17096 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGA1P17096 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 RCC2P3-201ENST00000418112 1537 ntBASIC19.69■□□□□ 0.74
HMGA1P17096 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGA1P17096 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGA1P17096 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGA1P17096 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.68■□□□□ 0.74
HMGA1P17096 LINC01311-201ENST00000565162 1445 ntBASIC19.68■□□□□ 0.74
HMGA1P17096 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.68■□□□□ 0.74
HMGA1P17096 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 SEC1P-202ENST00000473944 940 ntBASIC19.68■□□□□ 0.74
HMGA1P17096 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
HMGA1P17096 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
HMGA1P17096 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGA1P17096 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
HMGA1P17096 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGA1P17096 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 AC073130.3-201ENST00000624389 2278 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 HBZP1-201ENST00000354915 429 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGA1P17096 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGA1P17096 AC092597.1-201ENST00000487352 616 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 VENTXP5-201ENST00000523979 775 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HMGA1P17096 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 AC008556.1-201ENST00000610908 2040 ntBASIC19.67■□□□□ 0.74
HMGA1P17096 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGA1P17096 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGA1P17096 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGA1P17096 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGA1P17096 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HMGA1P17096 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HMGA1P17096 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
HMGA1P17096 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGA1P17096 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 FP475955.4-201ENST00000623131 1990 ntBASIC19.66■□□□□ 0.74
HMGA1P17096 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGA1P17096 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms