Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VCANP13611 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCANP13611 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
VCANP13611 AC011467.4-201ENST00000594891 528 ntBASIC19.63■□□□□ 0.73
VCANP13611 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.63■□□□□ 0.73
VCANP13611 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.63■□□□□ 0.73
VCANP13611 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VCANP13611 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.62■□□□□ 0.73
VCANP13611 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.62■□□□□ 0.73
VCANP13611 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 KRT8P11-201ENST00000409686 1436 ntBASIC19.62■□□□□ 0.73
VCANP13611 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VCANP13611 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 PAWRP1-201ENST00000451083 565 ntBASIC19.62■□□□□ 0.73
VCANP13611 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.62■□□□□ 0.73
VCANP13611 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.62■□□□□ 0.73
VCANP13611 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.62■□□□□ 0.73
VCANP13611 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VCANP13611 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCANP13611 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.62■□□□□ 0.73
VCANP13611 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
VCANP13611 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.61■□□□□ 0.73
VCANP13611 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.61■□□□□ 0.73
VCANP13611 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 AL645939.2-201ENST00000427340 991 ntBASIC19.61■□□□□ 0.73
VCANP13611 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.61■□□□□ 0.73
VCANP13611 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.61■□□□□ 0.73
VCANP13611 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 MIR2861-201ENST00000636310 90 ntBASIC19.61■□□□□ 0.73
VCANP13611 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.61■□□□□ 0.73
VCANP13611 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.61■□□□□ 0.73
VCANP13611 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.61■□□□□ 0.73
VCANP13611 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.61■□□□□ 0.73
VCANP13611 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCANP13611 SMG8-203ENST00000578922 2178 ntBASIC19.6■□□□□ 0.73
VCANP13611 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
VCANP13611 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.6■□□□□ 0.73
VCANP13611 AL157888.1-201ENST00000631930 593 ntBASIC19.6■□□□□ 0.73
VCANP13611 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.6■□□□□ 0.73
VCANP13611 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.6■□□□□ 0.73
VCANP13611 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.6■□□□□ 0.73
VCANP13611 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.6■□□□□ 0.73
VCANP13611 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.6■□□□□ 0.73
VCANP13611 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 GUSBP5-202ENST00000510805 1989 ntBASIC19.6■□□□□ 0.73
VCANP13611 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.6■□□□□ 0.73
VCANP13611 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 TREX1-205ENST00000625293 1783 ntBASIC19.6■□□□□ 0.73
VCANP13611 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCANP13611 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.6■□□□□ 0.73
VCANP13611 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VCANP13611 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.6■□□□□ 0.73
VCANP13611 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.6■□□□□ 0.73
VCANP13611 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.59■□□□□ 0.73
VCANP13611 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 PCDHAC2-203ENST00000615316 3011 ntBASIC19.59■□□□□ 0.73
VCANP13611 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.59■□□□□ 0.73
VCANP13611 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.59■□□□□ 0.73
VCANP13611 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.59■□□□□ 0.73
VCANP13611 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.59■□□□□ 0.73
VCANP13611 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.59■□□□□ 0.73
VCANP13611 YBX1P5-201ENST00000509441 847 ntBASIC19.59■□□□□ 0.73
VCANP13611 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCANP13611 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms