Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.85■□□□□ 0.45
LDB3O75112 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.85■□□□□ 0.45
LDB3O75112 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.85■□□□□ 0.45
LDB3O75112 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 BX088651.1-201ENST00000540551 451 ntBASIC17.85■□□□□ 0.45
LDB3O75112 KRT8P9-201ENST00000558927 1449 ntBASIC17.85■□□□□ 0.45
LDB3O75112 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 AP005242.2-201ENST00000580065 1175 ntBASIC17.85■□□□□ 0.45
LDB3O75112 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LDB3O75112 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.85■□□□□ 0.45
LDB3O75112 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
LDB3O75112 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB3O75112 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.84■□□□□ 0.45
LDB3O75112 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.84■□□□□ 0.45
LDB3O75112 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LDB3O75112 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB3O75112 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB3O75112 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB3O75112 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB3O75112 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.83■□□□□ 0.45
LDB3O75112 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB3O75112 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LDB3O75112 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB3O75112 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
LDB3O75112 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LDB3O75112 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LDB3O75112 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.83■□□□□ 0.45
LDB3O75112 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB3O75112 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB3O75112 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.83■□□□□ 0.44
LDB3O75112 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 MMP23A-201ENST00000234610 1017 ntBASIC17.83■□□□□ 0.44
LDB3O75112 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.83■□□□□ 0.44
LDB3O75112 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.83■□□□□ 0.44
LDB3O75112 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
LDB3O75112 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LDB3O75112 AC098818.2-201ENST00000564925 2320 ntBASIC17.83■□□□□ 0.44
LDB3O75112 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LDB3O75112 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB3O75112 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LDB3O75112 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
LDB3O75112 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.82■□□□□ 0.44
LDB3O75112 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.82■□□□□ 0.44
LDB3O75112 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB3O75112 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB3O75112 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
LDB3O75112 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms