Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88BA6NC98 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 AL512353.2-201ENST00000448759 1962 ntBASIC32.89■■■□□ 2.86
CCDC88BA6NC98 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC32.89■■■□□ 2.86
CCDC88BA6NC98 Z83836.1-201ENST00000624605 1642 ntBASIC32.89■■■□□ 2.86
CCDC88BA6NC98 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC32.89■■■□□ 2.85
CCDC88BA6NC98 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 BAALC-202ENST00000306391 243 ntTSL 5 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 BAALC-204ENST00000330955 222 ntTSL 5 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 AC106795.1-205ENST00000512851 1056 ntBASIC32.88■■■□□ 2.85
CCDC88BA6NC98 AP000867.3-201ENST00000524675 377 ntBASIC32.88■■■□□ 2.85
CCDC88BA6NC98 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88BA6NC98 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 KRT18P23-201ENST00000435622 1283 ntBASIC32.87■■■□□ 2.85
CCDC88BA6NC98 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88BA6NC98 ENSA-205ENST00000361532 792 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 ELP6-205ENST00000439305 880 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 KRT18P31-201ENST00000506277 1292 ntBASIC32.86■■■□□ 2.85
CCDC88BA6NC98 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 TSPY12P-201ENST00000421279 868 ntBASIC32.86■■■□□ 2.85
CCDC88BA6NC98 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 FOSL1P1-201ENST00000511041 816 ntBASIC32.86■■■□□ 2.85
CCDC88BA6NC98 BMF-207ENST00000559701 630 ntTSL 3 BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC88BA6NC98 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 AL160237.2-201ENST00000556165 472 ntBASIC32.85■■■□□ 2.85
CCDC88BA6NC98 TEN1-204ENST00000588202 862 ntTSL 3 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88BA6NC98 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 AP002469.2-201ENST00000531724 424 ntBASIC32.84■■■□□ 2.85
CCDC88BA6NC98 TK1-205ENST00000590862 642 ntTSL 3 BASIC32.84■■■□□ 2.85
CCDC88BA6NC98 AC023511.2-201ENST00000618803 211 ntBASIC32.84■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms