Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC007547.1-201ENST00000462177 490 ntBASIC1.4□□□□□ -2.19
LSM1O15116 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.4□□□□□ -2.19
LSM1O15116 ATP5EP1-201ENST00000510257 156 ntBASIC1.4□□□□□ -2.19
LSM1O15116 SNORA31.16-201ENST00000516773 139 ntBASIC1.4□□□□□ -2.19
LSM1O15116 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LSM1O15116 SNORD53B-201ENST00000577887 78 ntBASIC1.4□□□□□ -2.19
LSM1O15116 MIR4422-201ENST00000581938 83 ntBASIC1.4□□□□□ -2.19
LSM1O15116 AC090616.2-202ENST00000584248 222 ntBASIC1.4□□□□□ -2.19
LSM1O15116 MIR548AB-201ENST00000584917 84 ntBASIC1.4□□□□□ -2.19
LSM1O15116 AC012507.3-201ENST00000603556 477 ntBASIC1.4□□□□□ -2.19
LSM1O15116 AC120349.3-201ENST00000624377 529 ntBASIC1.4□□□□□ -2.19
LSM1O15116 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
LSM1O15116 MIR26B-201ENST00000362251 77 ntBASIC1.39□□□□□ -2.19
LSM1O15116 RNU5F-7P-201ENST00000363696 115 ntBASIC1.39□□□□□ -2.19
LSM1O15116 RNA5SP190-201ENST00000365222 118 ntBASIC1.39□□□□□ -2.19
LSM1O15116 RNU6-108P-201ENST00000365558 107 ntBASIC1.39□□□□□ -2.19
LSM1O15116 RNU6-1245P-201ENST00000411130 106 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AL117339.3-201ENST00000418733 162 ntBASIC1.39□□□□□ -2.19
LSM1O15116 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.39□□□□□ -2.19
LSM1O15116 AC078809.1-201ENST00000427601 140 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
LSM1O15116 SNAP23P1-201ENST00000433229 246 ntBASIC1.39□□□□□ -2.19
LSM1O15116 GPR143P-201ENST00000434155 205 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC244670.1-201ENST00000436879 112 ntBASIC1.39□□□□□ -2.19
LSM1O15116 UBE2V1P8-201ENST00000437166 265 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC245517.4-201ENST00000448601 281 ntBASIC1.39□□□□□ -2.19
LSM1O15116 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LSM1O15116 RPL31P58-201ENST00000469001 379 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.39□□□□□ -2.19
LSM1O15116 RNA5SP61-201ENST00000516453 100 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.39□□□□□ -2.19
LSM1O15116 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.39□□□□□ -2.19
LSM1O15116 MTCO3P23-201ENST00000561363 289 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC009094.1-201ENST00000564443 426 ntBASIC1.39□□□□□ -2.19
LSM1O15116 SUB1P3-201ENST00000564581 315 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.39□□□□□ -2.19
LSM1O15116 AC098848.2-201ENST00000588023 330 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC110760.3-201ENST00000598794 467 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC025811.1-201ENST00000604312 472 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC008945.2-201ENST00000606056 604 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC027449.1-201ENST00000608890 407 ntBASIC1.39□□□□□ -2.19
LSM1O15116 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC022960.3-201ENST00000619794 441 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AL450472.1-202ENST00000637286 180 ntBASIC1.39□□□□□ -2.19
LSM1O15116 AC241585.2-209ENST00000638217 143 ntBASIC1.39□□□□□ -2.19
LSM1O15116 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
LSM1O15116 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
LSM1O15116 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
LSM1O15116 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
LSM1O15116 RNU6-428P-201ENST00000362942 107 ntBASIC1.38□□□□□ -2.19
LSM1O15116 RNU4-13P-201ENST00000364019 141 ntBASIC1.38□□□□□ -2.19
LSM1O15116 RNU1-42P-201ENST00000364033 160 ntBASIC1.38□□□□□ -2.19
LSM1O15116 SNORD26-201ENST00000384147 75 ntBASIC1.38□□□□□ -2.19
LSM1O15116 SNORA12.2-201ENST00000391040 156 ntBASIC1.38□□□□□ -2.19
LSM1O15116 MIR1289-2-201ENST00000408360 111 ntBASIC1.38□□□□□ -2.19
LSM1O15116 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.38□□□□□ -2.19
LSM1O15116 AL596276.1-201ENST00000434465 418 ntBASIC1.38□□□□□ -2.19
LSM1O15116 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.38□□□□□ -2.19
LSM1O15116 RPL26P26-201ENST00000480251 434 ntBASIC1.38□□□□□ -2.19
LSM1O15116 MTCYBP35-201ENST00000503630 1137 ntBASIC1.38□□□□□ -2.19
LSM1O15116 RNU6-548P-201ENST00000517083 115 ntBASIC1.38□□□□□ -2.19
LSM1O15116 SNORA25.17-201ENST00000517184 124 ntBASIC1.38□□□□□ -2.19
LSM1O15116 SNORA31.24-201ENST00000517232 57 ntBASIC1.38□□□□□ -2.19
LSM1O15116 AC106038.2-201ENST00000520706 568 ntBASIC1.38□□□□□ -2.19
LSM1O15116 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.38□□□□□ -2.19
LSM1O15116 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.38□□□□□ -2.19
LSM1O15116 BNIP3P8-201ENST00000597863 560 ntBASIC1.38□□□□□ -2.19
LSM1O15116 AL356157.2-201ENST00000605122 111 ntBASIC1.38□□□□□ -2.19
LSM1O15116 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.38□□□□□ -2.19
LSM1O15116 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.38□□□□□ -2.19
LSM1O15116 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.38□□□□□ -2.19
LSM1O15116 RNU6-1097P-201ENST00000363586 107 ntBASIC1.37□□□□□ -2.19
LSM1O15116 RNU6-271P-201ENST00000363858 105 ntBASIC1.37□□□□□ -2.19
LSM1O15116 RNU6-60P-201ENST00000364792 103 ntBASIC1.37□□□□□ -2.19
LSM1O15116 SNORA67.6-201ENST00000391093 99 ntBASIC1.37□□□□□ -2.19
LSM1O15116 VN1R108P-201ENST00000431580 830 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AL133396.1-201ENST00000432048 687 ntBASIC1.37□□□□□ -2.19
LSM1O15116 MTND1P18-201ENST00000448191 573 ntBASIC1.37□□□□□ -2.19
LSM1O15116 GAPDHP17-201ENST00000449858 1001 ntBASIC1.37□□□□□ -2.19
LSM1O15116 snoU13.9-201ENST00000458927 103 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AC097473.1-201ENST00000508142 408 ntBASIC1.37□□□□□ -2.19
LSM1O15116 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.37□□□□□ -2.19
LSM1O15116 RNU6-1178P-201ENST00000516674 107 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AP001893.2-201ENST00000526949 202 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.37□□□□□ -2.19
LSM1O15116 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.37□□□□□ -2.19
LSM1O15116 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.37□□□□□ -2.19
LSM1O15116 AC024933.1-201ENST00000608472 348 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AL050303.3-201ENST00000613704 284 ntBASIC1.37□□□□□ -2.19
LSM1O15116 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
LSM1O15116 AC022418.1-201ENST00000624118 445 ntBASIC1.37□□□□□ -2.19
LSM1O15116 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.37□□□□□ -2.19
LSM1O15116 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.36□□□□□ -2.19
LSM1O15116 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
LSM1O15116 U8.1-201ENST00000362843 134 ntBASIC1.36□□□□□ -2.19
LSM1O15116 RNU6-1287P-201ENST00000362914 107 ntBASIC1.36□□□□□ -2.19
LSM1O15116 RNU6-1060P-201ENST00000384664 107 ntBASIC1.36□□□□□ -2.19
LSM1O15116 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.36□□□□□ -2.19
LSM1O15116 AL590135.1-201ENST00000422215 156 ntBASIC1.36□□□□□ -2.19
LSM1O15116 AC019205.3-201ENST00000424573 156 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms