Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
PCDHGA4Q9Y5G9 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA4Q9Y5G9 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA4Q9Y5G9 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA4Q9Y5G9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA4Q9Y5G9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 Y_RNA.66-201ENST00000362862 102 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 U3.3-201ENST00000362986 216 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU4-13P-201ENST00000364019 141 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 RN7SKP153-201ENST00000365026 316 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 AC008134.1-201ENST00000420943 193 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 RPL19P16-201ENST00000433839 588 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 snoU13.14-201ENST00000459372 104 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 MIR3129-201ENST00000581095 76 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 AC011447.4-201ENST00000587562 111 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 FAM71BP1-201ENST00000604431 523 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 AC107294.3-201ENST00000609211 526 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 AC002064.3-201ENST00000623448 346 ntBASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA4Q9Y5G9 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 Y_RNA.40-201ENST00000362645 93 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNA5SP123-201ENST00000363244 119 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 Y_RNA.203-201ENST00000364106 102 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 Y_RNA.213-201ENST00000364178 111 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU6-1138P-201ENST00000365359 106 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 SNORA48.4-201ENST00000391089 134 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNA5SP241-201ENST00000391326 114 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 SNORD11-201ENST00000459124 84 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 snoU13.20-201ENST00000459180 104 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AC009127.1-201ENST00000467090 155 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AC011406.1-201ENST00000512440 370 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AC098976.1-201ENST00000513014 541 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU6-63P-201ENST00000516690 95 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU7-149P-201ENST00000516739 59 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RNA5SP490-201ENST00000517141 136 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RN7SL290P-201ENST00000578661 300 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AL929325.1-201ENST00000603096 117 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AP005432.2-201ENST00000608162 586 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 MIR378J-201ENST00000611988 109 ntBASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
PCDHGA4Q9Y5G9 AC008079.2-201ENST00000623543 20396 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 SNURFL-201ENST00000309296 343 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU6-414P-201ENST00000363705 104 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RNU6-1292P-201ENST00000383856 107 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 Z98745.1-201ENST00000402553 494 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RPL36AP10-201ENST00000421785 322 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RPS29P33-201ENST00000456717 146 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RPL27AP5-201ENST00000469428 449 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 RN7SL738P-201ENST00000470264 297 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 AC105137.1-201ENST00000484355 562 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 OR9P1P-201ENST00000496431 281 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 AC010598.1-201ENST00000510378 103 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 VWA8P1-201ENST00000510889 176 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 HSPE1P18-201ENST00000517602 280 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 AC084364.2-201ENST00000546924 395 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 BNIP3P1-201ENST00000547295 580 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 5S_rRNA.13-201ENST00000622298 123 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 FAM35BP-202ENST00000497389 3337 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 AC004944.1-201ENST00000517807 3059 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 NEAT1-202ENST00000501122 22743 ntBASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDHGA4Q9Y5G9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 INTS6P1-201ENST00000504674 2530 ntBASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PCDHGA4Q9Y5G9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms