Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC007919.1-201ENST00000429380 217 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AC009237.8-201ENST00000445492 379 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AL162151.2-201ENST00000448875 158 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RN7SL542P-201ENST00000467147 294 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RPL35AP15-201ENST00000468042 339 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AC022137.1-201ENST00000483735 151 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AC023632.4-201ENST00000517783 191 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AL035470.1-201ENST00000622571 220 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AL672167.1-203ENST00000641299 2975 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 MAPK10-303ENST00000641324 3959 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AL133243.3-201ENST00000617415 3004 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 SNORD56.1-201ENST00000362913 68 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.310-201ENST00000365063 113 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RNU6-1080P-201ENST00000383982 107 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 MIR23A-201ENST00000385245 73 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RPL21P65-201ENST00000406094 466 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RN7SKP202-201ENST00000410439 330 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 MTATP8P2-201ENST00000435212 202 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RPL39P39-201ENST00000455840 151 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RPL21P10-201ENST00000463521 490 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RN7SL132P-201ENST00000478131 296 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AC099522.1-202ENST00000514718 367 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 SNORA67.7-201ENST00000516664 135 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 MIR4286-201ENST00000580651 93 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AC020895.1-201ENST00000595362 272 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 RMST_8.1-201ENST00000610287 165 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AC006133.1-201ENST00000617106 264 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 MIR6875-201ENST00000617506 72 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AP001005.3-201ENST00000622049 129 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 AC027309.3-201ENST00000623419 351 ntBASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NPAS3Q8IXF0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 RNU6-497P-201ENST00000365316 104 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.415-201ENST00000384012 112 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 MIR514A1-201ENST00000385133 98 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 SNORD96B-201ENST00000386148 79 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.587-201ENST00000391210 103 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 RPL23AP62-201ENST00000463396 453 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 RN7SL817P-201ENST00000480777 288 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 snoU109.6-201ENST00000516831 118 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 MIR3158-1-201ENST00000583596 81 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 AC091905.2-201ENST00000623143 306 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 MAPK10-286ENST00000641208 8747 ntBASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.47□□□□□ -1.69
NPAS3Q8IXF0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
NPAS3Q8IXF0 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
NPAS3Q8IXF0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 Y_RNA.17-201ENST00000362433 111 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RNA5SP151-201ENST00000365632 117 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RNU6-144P-201ENST00000383951 107 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 Y_RNA.456-201ENST00000384232 111 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 MIR544A-201ENST00000384855 91 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 MIR554-201ENST00000384874 96 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RNA5SP171-201ENST00000391071 115 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 MIR921-201ENST00000401133 56 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 U3.37-201ENST00000408528 213 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 AC107297.1-201ENST00000459991 176 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 AC006517.1-201ENST00000480485 328 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 AC117454.1-201ENST00000491120 168 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 AC016632.1-201ENST00000503994 196 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RNU1-45P-201ENST00000517191 141 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RN7SL703P-201ENST00000578485 302 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 AC053481.4-201ENST00000583164 216 ntBASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.46□□□□□ -1.7
NPAS3Q8IXF0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms