Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU1-13P-201ENST00000384499 162 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 U8.12-201ENST00000384701 133 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 MIR670-201ENST00000390142 98 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC023141.4-201ENST00000412031 328 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RPL23AP93-201ENST00000440847 484 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RPS3P1-201ENST00000456781 192 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RN7SL98P-201ENST00000462271 300 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 SNORA70.12-201ENST00000516084 153 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC022616.8-201ENST00000533569 253 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC090616.3-201ENST00000582184 217 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC134026.1-201ENST00000623249 2239 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AC139713.2-215ENST00000641428 5037 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 AC026241.1-201ENST00000517873 2142 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 RNU1-75P-201ENST00000347264 129 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 RNU6-529P-201ENST00000363383 104 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 U3.8-201ENST00000363675 217 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 MIR539-201ENST00000365690 78 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 MIR526A2-201ENST00000390198 65 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 RNU6-628P-201ENST00000410675 107 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 AIMP1P2-201ENST00000425294 312 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 HMGN2P16-201ENST00000456802 261 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 snoU13.22-201ENST00000459428 104 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 RNU7-23P-201ENST00000459465 62 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SRIP1-201ENST00000489235 288 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SNORA67.7-201ENST00000516664 135 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 CYCSP40-201ENST00000575927 294 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 RPL17P51-201ENST00000605218 238 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 AC006133.1-201ENST00000617106 264 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 AC008873.1-201ENST00000625051 138 ntBASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMD1Q9UGP4 SPRR2C-201ENST00000290702 219 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 RNU4-15P-201ENST00000362613 141 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 SNORD87-201ENST00000364849 89 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 RNU4-11P-201ENST00000365287 132 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 MIR616-201ENST00000385293 97 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 RPL23AP70-201ENST00000483361 460 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 RNU1-117P-201ENST00000517041 158 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 AC109810.1-201ENST00000534066 224 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 MIR3158-1-201ENST00000583596 81 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 AL391903.3-201ENST00000612158 163 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 MIR492-201ENST00000638676 116 ntBASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
LIMD1Q9UGP4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.40-201ENST00000362645 93 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RNU6-199P-201ENST00000362954 107 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RNU6-1210P-201ENST00000363775 107 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.341-201ENST00000365341 102 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL133475.1-201ENST00000404414 305 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RNU6-855P-201ENST00000410395 104 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RN7SKP202-201ENST00000410439 330 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL135790.2-201ENST00000437701 267 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL137159.1-201ENST00000452808 512 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC146507.2-201ENST00000460608 476 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC145146.1-201ENST00000496370 254 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 RNU2-44P-201ENST00000516795 194 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL359881.1-201ENST00000602916 267 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC069200.1-201ENST00000609511 323 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL391261.4-201ENST00000616012 481 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AL138880.2-201ENST00000616214 239 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 AC002546.1-201ENST00000588041 2504 ntBASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.73□□□□□ -1.65
LIMD1Q9UGP4 MAPK10-320ENST00000641462 6696 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms