Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC093815.1-201ENST00000508637 280 ntBASIC8.13□□□□□ -1.11
SENP3Q9H4L4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 RNA5SP108-201ENST00000605921 117 ntBASIC8.13□□□□□ -1.11
SENP3Q9H4L4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 RNA5SP487-201ENST00000410186 122 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 AC023141.4-201ENST00000412031 328 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 HSPE1P12-201ENST00000412576 301 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 RN7SL41P-201ENST00000476144 297 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 AC209154.1-201ENST00000582156 337 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 MIR7978-201ENST00000636158 59 ntBASIC8.12□□□□□ -1.11
SENP3Q9H4L4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
SENP3Q9H4L4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 Y_RNA.448-201ENST00000384185 108 ntBASIC8.11□□□□□ -1.11
SENP3Q9H4L4 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 MRPS21P9-201ENST00000571150 257 ntBASIC8.11□□□□□ -1.11
SENP3Q9H4L4 MIR4762-201ENST00000585261 75 ntBASIC8.11□□□□□ -1.11
SENP3Q9H4L4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
SENP3Q9H4L4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-34-201ENST00000362441 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-12-201ENST00000362583 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-29-201ENST00000362834 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-9-201ENST00000362912 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-21-201ENST00000362963 81 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-41-201ENST00000363608 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-11-201ENST00000363616 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-5-201ENST00000363633 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-4-201ENST00000363810 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-6-201ENST00000363942 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-42-201ENST00000364273 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-15-201ENST00000364809 81 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 RNU1-43P-201ENST00000365052 165 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-26-201ENST00000365067 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-10-201ENST00000365073 81 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-43-201ENST00000365503 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORD115-36-201ENST00000365629 82 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 SNORA80E-201ENST00000384744 137 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 RNU6-808P-201ENST00000391233 108 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 U2.20-201ENST00000613956 192 ntBASIC8.1□□□□□ -1.11
SENP3Q9H4L4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
SENP3Q9H4L4 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 SNORA62-201ENST00000365493 153 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 AL590139.1-201ENST00000416267 400 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 RNU7-128P-201ENST00000517247 62 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 MIR7641-1-201ENST00000627518 61 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 AL731556.1-201ENST00000394628 3711 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 OR56B2P-202ENST00000641377 2453 ntBASIC8.09□□□□□ -1.11
SENP3Q9H4L4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SENP3Q9H4L4 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC8.09□□□□□ -1.12
SENP3Q9H4L4 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
SENP3Q9H4L4 CAST-202ENST00000325674 3356 ntTSL 5 BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
SENP3Q9H4L4 RNA5SP305-201ENST00000362665 119 ntBASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms