Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SCARNA4-202ENST00000625402 129 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 SAGE4P-201ENST00000442271 3381 ntBASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NPAS3Q8IXF0 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.69
NPAS3Q8IXF0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 SNORA63.5-201ENST00000363548 123 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.528-201ENST00000384575 108 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 HSPE1P6-201ENST00000479457 291 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 ATP5EP1-201ENST00000510257 156 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP519-201ENST00000516480 119 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP490-201ENST00000517141 136 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 MIR5688-201ENST00000580619 83 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 MIR3202-2-201ENST00000635980 79 ntBASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NPAS3Q8IXF0 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 RNU1-14P-201ENST00000362759 152 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 U1.1-201ENST00000384101 164 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC009237.10-201ENST00000414112 510 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AL157831.1-201ENST00000426134 473 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AL451050.1-201ENST00000450126 415 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 RPS4XP2-201ENST00000458402 793 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP290-201ENST00000517133 127 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 MIR5571-201ENST00000577998 113 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC091178.1-203ENST00000584586 279 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 FAM27D1-201ENST00000612308 341 ntBASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.51□□□□□ -1.69
NPAS3Q8IXF0 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 SCN1A-220ENST00000641603 12506 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AC018529.3-201ENST00000624212 2254 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP130-201ENST00000364431 114 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 RNU1-63P-201ENST00000383902 164 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.593-201ENST00000410292 98 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 RNU6-710P-201ENST00000410424 105 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 SNORA19.1-201ENST00000410656 129 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 Z74021.1-201ENST00000423610 407 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 RPL23AP95-201ENST00000426806 265 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AC073261.1-201ENST00000429409 121 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 RN7SL585P-201ENST00000470538 280 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AC021205.2-201ENST00000480069 347 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AL592156.1-201ENST00000508758 304 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 FAM71BP1-201ENST00000604431 523 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AL022345.2-201ENST00000606307 135 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AL021997.2-201ENST00000615674 271 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 U6.99-201ENST00000637524 83 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 AC116096.1-201ENST00000566804 2314 ntBASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.5□□□□□ -1.69
NPAS3Q8IXF0 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.107-201ENST00000363190 121 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 SNORD115-30-201ENST00000364117 82 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP175-201ENST00000364275 119 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RNU6-978P-201ENST00000364371 103 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RNA5SP513-201ENST00000364648 118 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 Y_RNA.368-201ENST00000365547 113 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 RNU6-788P-201ENST00000390967 104 ntBASIC4.49□□□□□ -1.69
NPAS3Q8IXF0 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms