Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU1-108P-201ENST00000362556 161 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 SNORA67.2-201ENST00000384300 149 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 MIR105-2-201ENST00000385083 81 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 MIR548B-201ENST00000385247 97 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 BX323845.1-201ENST00000432417 179 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AL691482.1-201ENST00000453255 87 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AC108145.1-201ENST00000503770 153 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AC092490.3-201ENST00000545370 572 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 EIF4A1P12-201ENST00000551910 141 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AC044860.2-201ENST00000561005 179 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AL034555.1-201ENST00000604816 211 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 AP001005.3-201ENST00000622049 129 ntBASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
VPS9D1Q9Y2B5 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS9D1Q9Y2B5 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS9D1Q9Y2B5 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS9D1Q9Y2B5 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 SNURFL-201ENST00000309296 343 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 Y_RNA.111-201ENST00000363248 100 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RNU6-1125P-201ENST00000363601 107 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 Y_RNA.198-201ENST00000364013 98 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RNU6-497P-201ENST00000365316 104 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 Y_RNA.366-201ENST00000365540 102 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 SNORA18.2-201ENST00000383865 132 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 SNORA70.10-201ENST00000384515 134 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RNA5SP201-201ENST00000410316 124 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RPS17P2-201ENST00000461663 408 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RN7SL222P-201ENST00000476452 299 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RN7SL591P-201ENST00000496150 292 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 ENPP7P9-201ENST00000514456 627 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 AL451007.1-201ENST00000595491 289 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 AC019206.1-201ENST00000621938 425 ntBASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS9D1Q9Y2B5 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RNU6-217P-201ENST00000384164 104 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 MIR937-201ENST00000401271 86 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 CYCSP48-201ENST00000417124 323 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AL591419.1-201ENST00000427423 339 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AC010285.1-201ENST00000470580 392 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RN7SL808P-201ENST00000496066 299 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AC083906.5-201ENST00000503722 328 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AC091826.1-201ENST00000514065 313 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RNU6-581P-201ENST00000516214 105 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RNA5SP228-201ENST00000516232 133 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 RNU2-44P-201ENST00000516795 194 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 MIR3936-201ENST00000584304 110 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AC093732.2-201ENST00000607950 274 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 BMS1P21-201ENST00000634565 365 ntBASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS9D1Q9Y2B5 AC125257.1-201ENST00000560400 2930 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 SNORA63D-201ENST00000364359 132 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 RNU2-13P-201ENST00000515909 113 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 RNA5SP249-201ENST00000516127 99 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 RNU6-126P-201ENST00000516685 103 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 AC084364.2-201ENST00000546924 395 ntBASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VPS9D1Q9Y2B5 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms