Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 ZNF137P-201ENST00000456718 1920 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNU1-108P-201ENST00000362556 161 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNU6-884P-201ENST00000363889 107 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNA5SP515-201ENST00000364570 118 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNA5SP428-201ENST00000365129 132 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 Y_RNA.328-201ENST00000365208 113 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNU6-487P-201ENST00000365430 104 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 Y_RNA.587-201ENST00000391210 103 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RPL34P20-201ENST00000442771 351 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RPL39P40-201ENST00000445481 146 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RN7SL443P-201ENST00000464331 290 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RN7SL481P-201ENST00000477764 299 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RN7SL441P-201ENST00000492388 296 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AIG1P1-201ENST00000503376 148 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 RNA5SP249-201ENST00000516127 99 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AC062037.1-201ENST00000605302 128 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AC018692.3-201ENST00000623929 123 ntBASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
PCDHB3Q9Y5E6 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 SDAD1P1-202ENST00000524156 2051 ntBASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 AP000542.2-201ENST00000623199 6179 ntBASIC4.84□□□□□ -1.64
PCDHB3Q9Y5E6 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 RNU6-756P-201ENST00000383997 107 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 MIR141-201ENST00000384975 95 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 RN7SKP46-201ENST00000515942 234 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 RNA5SP43-201ENST00000516559 110 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 SNRPGP15-201ENST00000600149 222 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 TCL6_2.1-201ENST00000615162 119 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 AC005562.2-201ENST00000618264 111 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 AL023881.1-201ENST00000621088 301 ntBASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHB3Q9Y5E6 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC002543.1-201ENST00000299783 1954 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AL513302.2-201ENST00000562313 1842 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AP002088.1-201ENST00000382740 395 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 RNU6-484P-201ENST00000384016 107 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 RNA5SP87-201ENST00000384155 118 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 SNORA72-201ENST00000384339 132 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AL365496.1-201ENST00000426885 215 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC005300.1-201ENST00000428401 373 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 Z75741.1-201ENST00000446793 314 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 NDUFS5P3-201ENST00000450668 321 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC009220.1-201ENST00000451614 275 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC090515.1-201ENST00000465295 476 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 RN7SL132P-201ENST00000478131 296 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 RN7SL319P-201ENST00000480656 221 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 RNU5F-2P-201ENST00000516066 82 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC027176.1-201ENST00000560204 514 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AC087385.3-201ENST00000620477 187 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 MIR6715B-201ENST00000637172 77 ntBASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHB3Q9Y5E6 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHB3Q9Y5E6 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHB3Q9Y5E6 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PCDHB3Q9Y5E6 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHB3Q9Y5E6 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHB3Q9Y5E6 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms