Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-CQ95604 SNORA63.4-201ENST00000362763 126 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 SDHCP2-201ENST00000398565 501 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 RNA5SP201-201ENST00000410316 124 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 EIF4HP2-201ENST00000424380 563 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-CQ95604 AC245047.8-201ENST00000456455 284 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-CQ95604 AC023043.3-201ENST00000593113 385 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 AC005562.2-201ENST00000618264 111 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 AL773545.4-201ENST00000637262 310 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 AL513478.4-201ENST00000641636 310 ntBASIC4.85□□□□□ -1.63
HLA-CQ95604 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-CQ95604 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
HLA-CQ95604 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
HLA-CQ95604 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.85□□□□□ -1.63
HLA-CQ95604 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-CQ95604 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HLA-CQ95604 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-CQ95604 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-CQ95604 CENPCP1-201ENST00000533085 2578 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-CQ95604 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-CQ95604 RN7SKP185-201ENST00000362813 326 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 Y_RNA.229-201ENST00000364347 113 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 RNU6-1180P-201ENST00000364935 107 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 Y_RNA.309-201ENST00000365046 111 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 MIR549A-201ENST00000385268 96 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 RNU6-460P-201ENST00000391158 108 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 AL117339.2-201ENST00000430475 180 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-CQ95604 PRSS3P4-201ENST00000453323 162 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-CQ95604 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-CQ95604 RNU5F-2P-201ENST00000516066 82 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 RNA5SP76-201ENST00000516277 87 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 RNU2-56P-201ENST00000516826 190 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 RNU6-709P-201ENST00000517257 104 ntBASIC4.84□□□□□ -1.63
HLA-CQ95604 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-CQ95604 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-CQ95604 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.84□□□□□ -1.63
HLA-CQ95604 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
HLA-CQ95604 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-CQ95604 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HLA-CQ95604 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.84□□□□□ -1.64
HLA-CQ95604 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
HLA-CQ95604 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
HLA-CQ95604 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.64
HLA-CQ95604 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HLA-CQ95604 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 SNORD114-7-201ENST00000362520 77 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNU1-132P-201ENST00000364300 164 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 Y_RNA.251-201ENST00000364551 99 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNA5SP513-201ENST00000364648 118 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 Y_RNA.521-201ENST00000384560 114 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNU6-768P-201ENST00000384683 107 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 MIR659-201ENST00000384963 97 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-CQ95604 AL606845.1-201ENST00000404881 255 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNU6ATAC-201ENST00000408749 126 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 AL353748.1-201ENST00000440753 474 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNU7-141P-201ENST00000459304 62 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 AC078817.1-201ENST00000492623 435 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 AC023141.12-201ENST00000512399 199 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 RNU6-589P-201ENST00000516485 107 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 EIF4A1P12-201ENST00000551910 141 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 AL161756.2-201ENST00000604597 246 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 PCGEM1.1-201ENST00000613431 131 ntBASIC4.83□□□□□ -1.64
HLA-CQ95604 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
HLA-CQ95604 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-CQ95604 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HLA-CQ95604 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-CQ95604 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-CQ95604 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-CQ95604 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-CQ95604 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HLA-CQ95604 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-CQ95604 MIR367-201ENST00000362299 68 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 RNU6-50P-201ENST00000362356 103 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 RNU6-1255P-201ENST00000363434 112 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 U3.9-201ENST00000363823 204 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 Y_RNA.572-201ENST00000384757 98 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 RNA5SP296-201ENST00000410523 111 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-CQ95604 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.82□□□□□ -1.64
HLA-CQ95604 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.82□□□□□ -1.64
HLA-CQ95604 SCARNA10-201ENST00000459255 330 ntBASIC4.82□□□□□ -1.64
HLA-CQ95604 snoU13.14-201ENST00000459372 104 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms