Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RNA5SP397-201ENST00000391323 118 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 NDUFS5P4-201ENST00000412983 318 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AC092017.2-201ENST00000427600 362 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 RN7SL385P-201ENST00000468873 276 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 KC877373.1-201ENST00000479066 408 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 CR383656.8-201ENST00000549046 145 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AL160236.1-201ENST00000556317 195 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 MIR4277-201ENST00000578298 84 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 SNRPGP20-201ENST00000604477 205 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 Y_RNA.415-201ENST00000384012 112 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 MIR1290-201ENST00000408735 78 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 MIR1278-201ENST00000408753 81 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AL691449.1-201ENST00000426570 421 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 SNRPEP9-201ENST00000436794 238 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 RNA5SP103-201ENST00000459503 118 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 RPL21P10-201ENST00000463521 490 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 RPL31P41-201ENST00000477967 372 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AC073073.1-201ENST00000493920 463 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 RNU6-107P-201ENST00000516643 102 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AC007012.1-201ENST00000567192 175 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 AC015813.6-201ENST00000624409 5808 ntBASIC4.27□□□□□ -1.73
RNFT1Q5M7Z0 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AL133412.1-201ENST00000380194 2992 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 MARK2P15-201ENST00000432204 2186 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RNA5SP447-201ENST00000363749 119 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RNU6-440P-201ENST00000390882 105 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RPL26P9-201ENST00000457466 433 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RN7SL585P-201ENST00000470538 280 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RNA5SP281-201ENST00000516504 135 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AP001781.1-201ENST00000530977 207 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AC015720.1-201ENST00000565251 277 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 RNA5SP108-201ENST00000605921 117 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 BX005214.3-202ENST00000619809 325 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ADAM5-202ENST00000399789 1942 ntBASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNFT1Q5M7Z0 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 AL592182.3-201ENST00000642132 3304 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 RNU6-309P-201ENST00000364573 106 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 RNA5SP125-201ENST00000364843 120 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 SNORA72-201ENST00000384339 132 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 MIR153-1-201ENST00000384914 90 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 MIR549A-201ENST00000385268 96 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 RN7SKP267-201ENST00000410381 285 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 RNU2-55P-201ENST00000411146 174 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 AC079780.1-201ENST00000428259 207 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 NDUFS5P3-201ENST00000450668 321 ntBASIC4.25□□□□□ -1.73
RNFT1Q5M7Z0 RPS4XP2-201ENST00000458402 793 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms