Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.12□□□□□ -1.75
LIG3P49916 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.12□□□□□ -1.75
LIG3P49916 MIR7151-201ENST00000617477 60 ntBASIC4.12□□□□□ -1.75
LIG3P49916 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.12□□□□□ -1.75
LIG3P49916 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.11□□□□□ -1.75
LIG3P49916 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG3P49916 RNA5SP283-201ENST00000365604 119 ntBASIC4.11□□□□□ -1.75
LIG3P49916 SNORA57.1-201ENST00000391227 145 ntBASIC4.11□□□□□ -1.75
LIG3P49916 RPL21P65-201ENST00000406094 466 ntBASIC4.11□□□□□ -1.75
LIG3P49916 RN7SKP61-201ENST00000410642 295 ntBASIC4.11□□□□□ -1.75
LIG3P49916 RNU6-628P-201ENST00000410675 107 ntBASIC4.11□□□□□ -1.75
LIG3P49916 RPL23AP82-202ENST00000427528 469 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AC005300.1-201ENST00000428401 373 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AL500522.2-201ENST00000448562 343 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AL162151.2-201ENST00000448875 158 ntBASIC4.11□□□□□ -1.75
LIG3P49916 SSXP4-201ENST00000451349 245 ntBASIC4.11□□□□□ -1.75
LIG3P49916 RPS4XP22-201ENST00000480755 780 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.11□□□□□ -1.75
LIG3P49916 RNU6-111P-201ENST00000517179 105 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.11□□□□□ -1.75
LIG3P49916 AC006199.1-201ENST00000548728 219 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.11□□□□□ -1.75
LIG3P49916 VN1R85P-201ENST00000601587 426 ntBASIC4.11□□□□□ -1.75
LIG3P49916 AC011476.5-201ENST00000615594 130 ntBASIC4.11□□□□□ -1.75
LIG3P49916 MIR6076-201ENST00000617521 113 ntBASIC4.11□□□□□ -1.75
LIG3P49916 MIR3199-2-201ENST00000636243 86 ntBASIC4.11□□□□□ -1.75
LIG3P49916 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG3P49916 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG3P49916 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.11□□□□□ -1.75
LIG3P49916 MAPK10-373ENST00000641983 6772 ntBASIC4.11□□□□□ -1.75
LIG3P49916 IPO8P1-201ENST00000455509 3109 ntBASIC4.1□□□□□ -1.75
LIG3P49916 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG3P49916 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG3P49916 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG3P49916 AC092268.1-201ENST00000342691 405 ntBASIC4.1□□□□□ -1.75
LIG3P49916 Y_RNA.319-201ENST00000365138 92 ntBASIC4.1□□□□□ -1.75
LIG3P49916 Y_RNA.352-201ENST00000365439 102 ntBASIC4.1□□□□□ -1.75
LIG3P49916 Y_RNA.581-201ENST00000391017 97 ntBASIC4.1□□□□□ -1.75
LIG3P49916 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.1□□□□□ -1.75
LIG3P49916 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LIG3P49916 RPL30P14-201ENST00000482744 348 ntBASIC4.1□□□□□ -1.75
LIG3P49916 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.1□□□□□ -1.75
LIG3P49916 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.1□□□□□ -1.75
LIG3P49916 AC026726.1-201ENST00000512859 601 ntBASIC4.1□□□□□ -1.75
LIG3P49916 RNU6-1338P-201ENST00000516328 91 ntBASIC4.1□□□□□ -1.75
LIG3P49916 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.1□□□□□ -1.75
LIG3P49916 AC024220.1-201ENST00000603675 484 ntBASIC4.1□□□□□ -1.75
LIG3P49916 AL138963.2-201ENST00000605137 226 ntBASIC4.1□□□□□ -1.75
LIG3P49916 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.1□□□□□ -1.75
LIG3P49916 AC002076.2-201ENST00000617362 122 ntBASIC4.1□□□□□ -1.75
LIG3P49916 AF117829.1-206ENST00000621883 3802 ntBASIC4.1□□□□□ -1.75
LIG3P49916 OTUD4P1-201ENST00000237841 3067 ntBASIC4.1□□□□□ -1.75
LIG3P49916 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG3P49916 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG3P49916 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.1□□□□□ -1.75
LIG3P49916 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.09□□□□□ -1.75
LIG3P49916 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
LIG3P49916 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIG3P49916 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
LIG3P49916 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIG3P49916 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-137P-201ENST00000363680 108 ntBASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-487P-201ENST00000365430 104 ntBASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-926P-201ENST00000384075 107 ntBASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-318P-201ENST00000384283 103 ntBASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-937P-201ENST00000384325 106 ntBASIC4.09□□□□□ -1.75
LIG3P49916 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIG3P49916 AL159169.1-201ENST00000421119 127 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC078809.1-201ENST00000427601 140 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC096638.1-201ENST00000444678 216 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG3P49916 RPL32P34-201ENST00000486380 400 ntBASIC4.09□□□□□ -1.75
LIG3P49916 RNU6-1198P-201ENST00000516904 67 ntBASIC4.09□□□□□ -1.75
LIG3P49916 ACA59.2-201ENST00000517061 156 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.09□□□□□ -1.75
LIG3P49916 AC027288.2-201ENST00000553028 243 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC021231.3-201ENST00000558497 370 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG3P49916 MIR5684-201ENST00000585074 65 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AL109918.3-201ENST00000603072 338 ntBASIC4.09□□□□□ -1.75
LIG3P49916 HSPE1P7-201ENST00000604681 321 ntBASIC4.09□□□□□ -1.75
LIG3P49916 AC073657.2-201ENST00000605661 303 ntBASIC4.09□□□□□ -1.75
LIG3P49916 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.09□□□□□ -1.76
LIG3P49916 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIG3P49916 SNORA60-201ENST00000362396 134 ntBASIC4.08□□□□□ -1.76
LIG3P49916 RNU6-1159P-201ENST00000362933 107 ntBASIC4.08□□□□□ -1.76
LIG3P49916 SNORD113-8-201ENST00000363497 74 ntBASIC4.08□□□□□ -1.76
LIG3P49916 U8.10-201ENST00000384260 133 ntBASIC4.08□□□□□ -1.76
LIG3P49916 RNU4-70P-201ENST00000384579 139 ntBASIC4.08□□□□□ -1.76
LIG3P49916 RNA5SP390-201ENST00000410191 113 ntBASIC4.08□□□□□ -1.76
LIG3P49916 RNU2-20P-201ENST00000410425 191 ntBASIC4.08□□□□□ -1.76
LIG3P49916 Y_RNA.602-201ENST00000410535 92 ntBASIC4.08□□□□□ -1.76
LIG3P49916 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.08□□□□□ -1.76
LIG3P49916 AC002075.2-201ENST00000425207 252 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AC017083.1-201ENST00000428093 483 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms