Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CXCL1P09341 AC108059.3-201ENST00000456388 214 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 RNA5SP490-201ENST00000517141 136 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 RNA5SP437-201ENST00000517249 129 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC091163.3-201ENST00000518269 1144 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC026616.1-201ENST00000523157 525 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.61□□□□□ -2.31
CXCL1P09341 HMGB1P33-201ENST00000563485 527 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.61□□□□□ -2.31
CXCL1P09341 AP001542.1-201ENST00000591314 200 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC025754.2-201ENST00000606491 432 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AL021879.1-201ENST00000611756 288 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC099654.8-201ENST00000637757 681 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 AC006927.2-201ENST00000639256 389 ntBASIC0.61□□□□□ -2.31
CXCL1P09341 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.61□□□□□ -2.31
CXCL1P09341 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.6□□□□□ -2.31
CXCL1P09341 AC010615.1-201ENST00000594254 1764 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 SNORA75B-201ENST00000384053 137 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
CXCL1P09341 FCF1P10-201ENST00000407590 479 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 Y_RNA.623-201ENST00000411128 95 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC123900.1-201ENST00000420390 96 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 PIGFP2-201ENST00000421400 651 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AL590556.1-201ENST00000423231 483 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 MTCYBP5-201ENST00000423752 1135 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AL627311.1-201ENST00000431514 115 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AL591212.2-201ENST00000433923 257 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 TIMM9P1-201ENST00000436122 256 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.6□□□□□ -2.31
CXCL1P09341 FTH1P25-201ENST00000447665 469 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 MTCO1P27-201ENST00000448269 226 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AL583843.1-201ENST00000456070 346 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC079140.3-201ENST00000511111 550 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.6□□□□□ -2.31
CXCL1P09341 AL136520.1-202ENST00000555494 763 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.6□□□□□ -2.31
CXCL1P09341 MIR3664-201ENST00000579074 99 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AP005136.1-201ENST00000579765 429 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AL391001.1-201ENST00000602747 715 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC174048.1-201ENST00000603389 144 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC069114.2-201ENST00000604699 304 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC022893.3-201ENST00000607665 437 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC012467.1-201ENST00000607740 256 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC063943.3-201ENST00000615562 356 ntBASIC0.6□□□□□ -2.31
CXCL1P09341 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.6□□□□□ -2.31
CXCL1P09341 AC008163.1-202ENST00000636004 2889 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CXCL1P09341 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.59□□□□□ -2.31
CXCL1P09341 MIR412-201ENST00000362142 91 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 SNORD3E-201ENST00000362899 217 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RNU5B-4P-201ENST00000363508 111 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 SNORA63D-201ENST00000364359 132 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 SNORD32B-201ENST00000364460 84 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.59□□□□□ -2.31
CXCL1P09341 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
CXCL1P09341 SNORD116-20-201ENST00000384529 92 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 MIR100-201ENST00000385259 80 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RN7SKP266-201ENST00000410232 287 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RNU2-64P-201ENST00000411315 191 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.59□□□□□ -2.31
CXCL1P09341 AP1B1P2-201ENST00000416196 106 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AL365400.1-201ENST00000431854 640 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RPL17P35-201ENST00000432217 549 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 MTND5P15-201ENST00000434246 349 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.59□□□□□ -2.31
CXCL1P09341 MTCO2P25-201ENST00000447065 681 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.59□□□□□ -2.31
CXCL1P09341 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.59□□□□□ -2.31
CXCL1P09341 AC006026.2-201ENST00000457376 180 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.59□□□□□ -2.31
CXCL1P09341 RN7SKP88-201ENST00000516847 250 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RNU6-677P-201ENST00000516914 101 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RNU6-334P-201ENST00000517072 102 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.59□□□□□ -2.31
CXCL1P09341 AL136363.2-201ENST00000604173 851 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AL022154.1-201ENST00000604698 785 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AC090578.1-201ENST00000604955 591 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 7SK.8-201ENST00000612110 250 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 7SK.11-201ENST00000615477 250 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 RMST_4.1-201ENST00000616886 107 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 7SK.13-201ENST00000622040 250 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 SCARNA4-202ENST00000625402 129 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.59□□□□□ -2.31
CXCL1P09341 OR4G3P-201ENST00000633500 913 ntBASIC0.59□□□□□ -2.31
CXCL1P09341 AL391987.6-201ENST00000305671 199 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 MIR340-201ENST00000362125 95 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 RNU6-621P-201ENST00000364752 109 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 MIR764-201ENST00000390811 85 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 RNU6-1176P-201ENST00000390955 107 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 RNU11-5P-201ENST00000391216 129 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 MIR1305-201ENST00000408300 86 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 MIR1284-201ENST00000408337 120 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 BTF3L4P1-201ENST00000413813 468 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 MTND4P20-201ENST00000424125 869 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 CALM1P1-201ENST00000442082 433 ntBASIC0.58□□□□□ -2.32
CXCL1P09341 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.58□□□□□ -2.32
CXCL1P09341 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms