Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.572-201ENST00000384757 98 ntBASIC4.34□□□□□ -1.71
MSX1P28360 NDUFS5P4-201ENST00000412983 318 ntBASIC4.34□□□□□ -1.71
MSX1P28360 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
MSX1P28360 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.34□□□□□ -1.71
MSX1P28360 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.34□□□□□ -1.71
MSX1P28360 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX1P28360 AL121914.1-201ENST00000450188 156 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AC016925.1-201ENST00000458303 298 ntBASIC4.34□□□□□ -1.71
MSX1P28360 RPL7AP28-201ENST00000464513 571 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.34□□□□□ -1.71
MSX1P28360 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX1P28360 RNU6-1073P-201ENST00000517182 106 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AP001328.1-201ENST00000528550 176 ntBASIC4.34□□□□□ -1.71
MSX1P28360 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.34□□□□□ -1.71
MSX1P28360 AC127455.1-201ENST00000565496 145 ntBASIC4.34□□□□□ -1.71
MSX1P28360 MIR3646-201ENST00000578301 84 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AC090897.2-201ENST00000581715 130 ntBASIC4.34□□□□□ -1.71
MSX1P28360 RN7SL435P-201ENST00000584418 282 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AC005255.1-201ENST00000593748 216 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AL020997.2-201ENST00000602607 184 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AL391903.3-201ENST00000612158 163 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AL391261.4-201ENST00000616012 481 ntBASIC4.34□□□□□ -1.71
MSX1P28360 AL136164.3-201ENST00000624429 3978 ntBASIC4.34□□□□□ -1.71
MSX1P28360 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSX1P28360 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
MSX1P28360 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX1P28360 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX1P28360 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX1P28360 AC022336.2-201ENST00000568966 2538 ntBASIC4.33□□□□□ -1.72
MSX1P28360 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
MSX1P28360 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 RNU1-94P-201ENST00000362627 173 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-1255P-201ENST00000363434 112 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-407P-201ENST00000365280 104 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-476P-201ENST00000384726 107 ntBASIC4.33□□□□□ -1.72
MSX1P28360 MIR493-201ENST00000385254 89 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-460P-201ENST00000391158 108 ntBASIC4.33□□□□□ -1.72
MSX1P28360 U3.26-201ENST00000391236 204 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RN7SKP267-201ENST00000410381 285 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-710P-201ENST00000410424 105 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AL645608.4-201ENST00000423619 154 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AC016831.4-201ENST00000438302 307 ntBASIC4.33□□□□□ -1.72
MSX1P28360 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
MSX1P28360 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX1P28360 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-581P-201ENST00000516214 105 ntBASIC4.33□□□□□ -1.72
MSX1P28360 SNORA72.7-201ENST00000516349 94 ntBASIC4.33□□□□□ -1.72
MSX1P28360 RNU6-107P-201ENST00000516643 102 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AC115990.1-201ENST00000526957 301 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX1P28360 NACAP3-201ENST00000552100 481 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AC093249.4-201ENST00000564755 259 ntBASIC4.33□□□□□ -1.72
MSX1P28360 AC025946.2-201ENST00000603398 234 ntBASIC4.33□□□□□ -1.72
MSX1P28360 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
MSX1P28360 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 AC126323.6-202ENST00000568092 3511 ntBASIC4.33□□□□□ -1.72
MSX1P28360 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX1P28360 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.32□□□□□ -1.72
MSX1P28360 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 AC106871.1-201ENST00000568324 3102 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 RNU6-1048P-201ENST00000364054 107 ntBASIC4.32□□□□□ -1.72
MSX1P28360 RNU6-487P-201ENST00000365430 104 ntBASIC4.32□□□□□ -1.72
MSX1P28360 RNU6-969P-201ENST00000383900 105 ntBASIC4.32□□□□□ -1.72
MSX1P28360 Y_RNA.415-201ENST00000384012 112 ntBASIC4.32□□□□□ -1.72
MSX1P28360 RNU6-643P-201ENST00000384018 107 ntBASIC4.32□□□□□ -1.72
MSX1P28360 RNU6-622P-201ENST00000384272 103 ntBASIC4.32□□□□□ -1.72
MSX1P28360 MIR526A2-201ENST00000390198 65 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AL590762.2-201ENST00000395798 571 ntBASIC4.32□□□□□ -1.72
MSX1P28360 MIR208B-201ENST00000401172 77 ntBASIC4.32□□□□□ -1.72
MSX1P28360 Z98745.1-201ENST00000402553 494 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AL031003.1-201ENST00000404229 172 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.32□□□□□ -1.72
MSX1P28360 AC091868.1-201ENST00000508746 304 ntBASIC4.32□□□□□ -1.72
MSX1P28360 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX1P28360 MIR4679-2-201ENST00000578358 77 ntBASIC4.32□□□□□ -1.72
MSX1P28360 RN7SL176P-201ENST00000580352 264 ntBASIC4.32□□□□□ -1.72
MSX1P28360 MIR5688-201ENST00000580619 83 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX1P28360 U7.2-201ENST00000607576 63 ntBASIC4.32□□□□□ -1.72
MSX1P28360 AC005520.5-201ENST00000613926 164 ntBASIC4.32□□□□□ -1.72
MSX1P28360 MIR8069-1-201ENST00000616627 86 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms