Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 ZNF720P1-201ENST00000562403 1939 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 Y_RNA.91-201ENST00000363042 107 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 Y_RNA.124-201ENST00000363339 93 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNA5SP335-201ENST00000363817 110 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RN7SKP103-201ENST00000363848 320 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU6-1134P-201ENST00000365156 101 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU6-1124P-201ENST00000384169 107 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU1-106P-201ENST00000384382 164 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORD116-13-201ENST00000384408 92 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 U8.12-201ENST00000384701 133 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNA5SP201-201ENST00000410316 124 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AL591419.1-201ENST00000427423 339 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RPL23AP82-202ENST00000427528 469 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RPL23AP7-203ENST00000449021 469 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 CENPBD1P1-201ENST00000464061 469 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AC010531.2-201ENST00000465012 153 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RPL36AP21-201ENST00000490372 323 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU6-1282P-201ENST00000516735 96 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 RN7SL52P-201ENST00000584271 284 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AL139124.1-201ENST00000609123 421 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AL133243.3-201ENST00000617415 3004 ntBASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
PCDHGA4Q9Y5G9 AL672167.1-204ENST00000641875 3017 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RNA5SP305-201ENST00000362665 119 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 U3.2-201ENST00000362981 210 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU6-884P-201ENST00000363889 107 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORD56.6-201ENST00000384569 71 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RNA5SP339-201ENST00000390987 122 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 MIR873-201ENST00000401120 77 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC108075.1-201ENST00000424692 529 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC073465.2-201ENST00000440938 498 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 snoU13.4-201ENST00000458916 104 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 snoU13.24-201ENST00000458998 104 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC134698.5-201ENST00000519444 336 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RN7SL176P-201ENST00000580352 264 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 RN7SL435P-201ENST00000584418 282 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AC005972.2-201ENST00000604690 348 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 AL590808.1-201ENST00000618696 141 ntBASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA4Q9Y5G9 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORA18.2-201ENST00000383865 132 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORA56-201ENST00000383966 129 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORA67.2-201ENST00000384300 149 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 MIR548B-201ENST00000385247 97 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SNORA26-201ENST00000391286 122 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 RNU2-32P-201ENST00000411193 191 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 H2AFZP5-201ENST00000446960 382 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 RPL23AP62-201ENST00000463396 453 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 HMGB1P22-201ENST00000505315 124 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 AC091912.1-201ENST00000511351 248 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 AC026421.1-201ENST00000519101 163 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 MIR4458-201ENST00000578872 75 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 AC105245.1-201ENST00000581934 244 ntBASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PCDHGA4Q9Y5G9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms