Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC006001.4-201ENST00000622243 395 ntBASIC3.46□□□□□ -1.86
CCDC140Q96MF4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC140Q96MF4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RNU4-15P-201ENST00000362613 141 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RNA5SP307-201ENST00000362863 116 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SNORA53-201ENST00000391141 249 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RNU1-101P-201ENST00000391171 127 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SNORA74C-2-201ENST00000411179 201 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AC027124.2-201ENST00000428249 105 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 snoU13.14-201ENST00000459372 104 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AL121594.1-201ENST00000475906 575 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RN7SL817P-201ENST00000480777 288 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SERF1AP1-201ENST00000514575 187 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 HSPE1P18-201ENST00000517602 280 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RAB9BP1-201ENST00000519581 626 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SNRPGP20-201ENST00000604477 205 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AL160290.3-201ENST00000604869 165 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 uc_338.14-201ENST00000613162 166 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AC005520.5-201ENST00000613926 164 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 MIR6891-201ENST00000618788 93 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AP005019.3-201ENST00000620418 560 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AC007546.2-201ENST00000623996 360 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 AL109809.4-201ENST00000603520 2185 ntBASIC3.45□□□□□ -1.86
CCDC140Q96MF4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC140Q96MF4 RAD17P1-201ENST00000418130 2042 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 SNORA72.2-201ENST00000365028 127 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 SNORD6-201ENST00000365444 73 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 Y_RNA.569-201ENST00000384749 103 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 MIR129-1-201ENST00000384972 72 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 RNA5SP332-201ENST00000391063 115 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC097463.2-201ENST00000421074 142 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 RPL23AP3-201ENST00000453844 468 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 RNU6-625P-201ENST00000459412 107 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 RN7SL41P-201ENST00000476144 297 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AK6P2-201ENST00000549020 471 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC018448.1-201ENST00000552843 316 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC055872.1-201ENST00000570978 278 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 KLKP1-201ENST00000595979 403 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC008749.1-201ENST00000597650 306 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 UCA1.1-201ENST00000620952 75 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 MIR7641-1-201ENST00000627518 61 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC099654.7-201ENST00000635788 2127 ntBASIC3.44□□□□□ -1.86
CCDC140Q96MF4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC140Q96MF4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RNU6-1210P-201ENST00000363775 107 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 Y_RNA.269-201ENST00000364685 89 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RNA5SP22-201ENST00000365393 109 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RNU6-245P-201ENST00000384020 107 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 SNORA18.3-201ENST00000384122 132 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RNA5SP372-201ENST00000390836 115 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC009237.10-201ENST00000414112 510 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RPL23AP1-201ENST00000428990 471 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms