Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR6839-201ENST00000620425 113 ntBASIC5.08□□□□□ -1.6
COL9A1P20849 MIR1245B-201ENST00000636115 69 ntBASIC5.08□□□□□ -1.6
COL9A1P20849 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
COL9A1P20849 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.08□□□□□ -1.6
COL9A1P20849 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.08□□□□□ -1.6
COL9A1P20849 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.08□□□□□ -1.6
COL9A1P20849 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL9A1P20849 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL9A1P20849 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
COL9A1P20849 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC5.08□□□□□ -1.6
COL9A1P20849 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.08□□□□□ -1.6
COL9A1P20849 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.07□□□□□ -1.6
COL9A1P20849 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.07□□□□□ -1.6
COL9A1P20849 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 AL592182.3-201ENST00000642132 3304 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.07□□□□□ -1.6
COL9A1P20849 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 AL159152.1-201ENST00000635019 2587 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 SNORA70.6-201ENST00000383934 134 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 U8.12-201ENST00000384701 133 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 RNA5SP201-201ENST00000410316 124 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 EIF4A1P3-201ENST00000411521 244 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 RPL7AP49-201ENST00000429522 581 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 AL591438.1-201ENST00000433508 581 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 HMGN2P10-201ENST00000448085 265 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.07□□□□□ -1.6
COL9A1P20849 RNU6-581P-201ENST00000516214 105 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.07□□□□□ -1.6
COL9A1P20849 AC062037.1-201ENST00000605302 128 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 AC009831.4-201ENST00000620744 325 ntBASIC5.07□□□□□ -1.6
COL9A1P20849 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC5.07□□□□□ -1.6
COL9A1P20849 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.07□□□□□ -1.6
COL9A1P20849 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL9A1P20849 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
COL9A1P20849 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL9A1P20849 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 ZFRP1-201ENST00000457579 2970 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RNU6-674P-201ENST00000363831 107 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RNA5SP223-201ENST00000365174 120 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 SNORD12C-201ENST00000386307 89 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.06□□□□□ -1.6
COL9A1P20849 AC138761.5-201ENST00000433967 325 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RNU6-437P-201ENST00000459408 95 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RPL36AP21-201ENST00000490372 323 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RPS27AP10-201ENST00000496103 208 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC091868.1-201ENST00000508746 304 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.06□□□□□ -1.6
COL9A1P20849 AC040958.1-201ENST00000561102 201 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC007012.1-201ENST00000567192 175 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC012314.7-201ENST00000619693 93 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC025521.1-201ENST00000621624 286 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC5.06□□□□□ -1.6
COL9A1P20849 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL9A1P20849 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.06□□□□□ -1.6
COL9A1P20849 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL9A1P20849 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL9A1P20849 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.05□□□□□ -1.6
COL9A1P20849 RNA5SP125-201ENST00000364843 120 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 SNORA72-201ENST00000384339 132 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 Y_RNA.544-201ENST00000384650 113 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 RPL19P16-201ENST00000433839 588 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AC016831.4-201ENST00000438302 307 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AL356535.1-201ENST00000440335 398 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 MTATP6P21-201ENST00000440681 189 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AL162591.2-201ENST00000449634 317 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC5.05□□□□□ -1.6
COL9A1P20849 AC105137.1-201ENST00000484355 562 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 ACA59.2-201ENST00000517061 156 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AC025647.1-201ENST00000517879 253 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 PRELID2P1-201ENST00000552837 301 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.05□□□□□ -1.6
COL9A1P20849 AC105137.2-201ENST00000569073 466 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 MIR7853-201ENST00000584820 132 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 POLR3GP1-201ENST00000594073 261 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 AL021707.8-201ENST00000609428 183 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 CR392039.5-201ENST00000623201 510 ntBASIC5.05□□□□□ -1.6
COL9A1P20849 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.05□□□□□ -1.6
COL9A1P20849 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms