Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
MMP28Q9H239 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MMP28Q9H239 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.74■□□□□ 0.27
MMP28Q9H239 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 AL139384.1-201ENST00000612143 3047 ntBASIC16.74■□□□□ 0.27
MMP28Q9H239 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
MMP28Q9H239 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.74■□□□□ 0.27
MMP28Q9H239 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.74■□□□□ 0.27
MMP28Q9H239 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.74■□□□□ 0.27
MMP28Q9H239 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
MMP28Q9H239 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 AC084018.2-201ENST00000613093 2607 ntBASIC16.73■□□□□ 0.27
MMP28Q9H239 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 CROCCP5-201ENST00000436658 830 ntBASIC16.73■□□□□ 0.27
MMP28Q9H239 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.73■□□□□ 0.27
MMP28Q9H239 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.73■□□□□ 0.27
MMP28Q9H239 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 AC104771.1-201ENST00000603335 964 ntBASIC16.73■□□□□ 0.27
MMP28Q9H239 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.73■□□□□ 0.27
MMP28Q9H239 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MMP28Q9H239 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.73■□□□□ 0.27
MMP28Q9H239 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.72■□□□□ 0.27
MMP28Q9H239 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.72■□□□□ 0.27
MMP28Q9H239 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.72■□□□□ 0.27
MMP28Q9H239 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
MMP28Q9H239 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.72■□□□□ 0.27
MMP28Q9H239 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.72■□□□□ 0.27
MMP28Q9H239 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.72■□□□□ 0.27
MMP28Q9H239 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
MMP28Q9H239 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
MMP28Q9H239 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MMP28Q9H239 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms