Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.61■□□□□ 0.25
COL12A1Q99715 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 FAM197Y3-203ENST00000618346 717 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 AC079602.3-201ENST00000623931 403 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL12A1Q99715 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL12A1Q99715 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.61■□□□□ 0.25
COL12A1Q99715 HNRNPDP1-201ENST00000439535 754 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.61■□□□□ 0.25
COL12A1Q99715 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.61■□□□□ 0.25
COL12A1Q99715 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL12A1Q99715 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 AC116407.3-201ENST00000623905 1129 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 AC083906.6-201ENST00000641366 219 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 AC079781.4-201ENST00000641908 219 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 PCDHAC2-203ENST00000615316 3011 ntBASIC16.61■□□□□ 0.25
COL12A1Q99715 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.61■□□□□ 0.25
COL12A1Q99715 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.6■□□□□ 0.25
COL12A1Q99715 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.6■□□□□ 0.25
COL12A1Q99715 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.6■□□□□ 0.25
COL12A1Q99715 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL12A1Q99715 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.6■□□□□ 0.25
COL12A1Q99715 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.6■□□□□ 0.25
COL12A1Q99715 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.6■□□□□ 0.25
COL12A1Q99715 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
COL12A1Q99715 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 MIR3687-2-201ENST00000577708 61 ntBASIC16.6■□□□□ 0.25
COL12A1Q99715 MIR3687-1-201ENST00000614492 61 ntBASIC16.6■□□□□ 0.25
COL12A1Q99715 FEM1AP4-201ENST00000443167 1987 ntBASIC16.6■□□□□ 0.25
COL12A1Q99715 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
COL12A1Q99715 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL12A1Q99715 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.59■□□□□ 0.25
COL12A1Q99715 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 NSUN5P1-202ENST00000421140 1535 ntBASIC16.59■□□□□ 0.25
COL12A1Q99715 NSUN5P2-203ENST00000457352 1529 ntBASIC16.59■□□□□ 0.25
COL12A1Q99715 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.59■□□□□ 0.25
COL12A1Q99715 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.59■□□□□ 0.25
COL12A1Q99715 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 AL596442.2-201ENST00000610240 980 ntBASIC16.59■□□□□ 0.25
COL12A1Q99715 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.59■□□□□ 0.25
COL12A1Q99715 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.59■□□□□ 0.25
COL12A1Q99715 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
COL12A1Q99715 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.59■□□□□ 0.25
COL12A1Q99715 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL12A1Q99715 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL12A1Q99715 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL12A1Q99715 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
COL12A1Q99715 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.58■□□□□ 0.25
COL12A1Q99715 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL12A1Q99715 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 MED15P5-201ENST00000423150 992 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.58■□□□□ 0.24
COL12A1Q99715 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL12A1Q99715 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 SPCS2P1-201ENST00000561636 679 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.58■□□□□ 0.24
COL12A1Q99715 TREX1-205ENST00000625293 1783 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms