Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SPENQ96T58 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SPENQ96T58 FOSL1P1-201ENST00000511041 816 ntBASIC17.14■□□□□ 0.33
SPENQ96T58 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SPENQ96T58 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
SPENQ96T58 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.14■□□□□ 0.33
SPENQ96T58 CHCHD2P8-201ENST00000429873 447 ntBASIC17.14■□□□□ 0.33
SPENQ96T58 SLC25A1P1-201ENST00000528351 927 ntBASIC17.14■□□□□ 0.33
SPENQ96T58 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
SPENQ96T58 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.14■□□□□ 0.33
SPENQ96T58 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.14■□□□□ 0.33
SPENQ96T58 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
SPENQ96T58 IL9RP2-201ENST00000423948 1312 ntBASIC17.14■□□□□ 0.33
SPENQ96T58 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SPENQ96T58 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 BX276092.5-203ENST00000456199 560 ntBASIC17.14■□□□□ 0.33
SPENQ96T58 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SPENQ96T58 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.14■□□□□ 0.33
SPENQ96T58 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
SPENQ96T58 AL162377.1-201ENST00000618844 1793 ntBASIC17.13■□□□□ 0.33
SPENQ96T58 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.13■□□□□ 0.33
SPENQ96T58 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.13■□□□□ 0.33
SPENQ96T58 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.13■□□□□ 0.33
SPENQ96T58 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.13■□□□□ 0.33
SPENQ96T58 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.13■□□□□ 0.33
SPENQ96T58 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SPENQ96T58 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SPENQ96T58 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.13■□□□□ 0.33
SPENQ96T58 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.13■□□□□ 0.33
SPENQ96T58 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
SPENQ96T58 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SPENQ96T58 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.12■□□□□ 0.33
SPENQ96T58 AC024243.1-201ENST00000609234 778 ntBASIC17.12■□□□□ 0.33
SPENQ96T58 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.12■□□□□ 0.33
SPENQ96T58 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
SPENQ96T58 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.12■□□□□ 0.33
SPENQ96T58 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SPENQ96T58 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SPENQ96T58 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.12■□□□□ 0.33
SPENQ96T58 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.12■□□□□ 0.33
SPENQ96T58 AC034232.1-201ENST00000506026 1064 ntBASIC17.12■□□□□ 0.33
SPENQ96T58 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.12■□□□□ 0.33
SPENQ96T58 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SPENQ96T58 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.12■□□□□ 0.33
SPENQ96T58 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SPENQ96T58 MIR662-201ENST00000384847 95 ntBASIC17.11■□□□□ 0.33
SPENQ96T58 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SPENQ96T58 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.11■□□□□ 0.33
SPENQ96T58 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
SPENQ96T58 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SPENQ96T58 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SPENQ96T58 KRT16P4-201ENST00000453883 522 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms