Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 MIR662-201ENST00000384847 95 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 RNF126P1-202ENST00000569893 925 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 FAM197Y3-203ENST00000618346 717 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 YBX2P1-201ENST00000394192 760 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.63■□□□□ 0.57
CFAP54Q96N23 MIR3687-2-201ENST00000577708 61 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 MIR3687-1-201ENST00000614492 61 ntBASIC18.63■□□□□ 0.57
CFAP54Q96N23 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CFAP54Q96N23 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 AC211486.1-202ENST00000416371 468 ntBASIC18.62■□□□□ 0.57
CFAP54Q96N23 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 AC112482.1-201ENST00000492080 688 ntBASIC18.62■□□□□ 0.57
CFAP54Q96N23 AC211476.1-201ENST00000503899 468 ntBASIC18.62■□□□□ 0.57
CFAP54Q96N23 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 Z69720.1-201ENST00000601483 472 ntBASIC18.62■□□□□ 0.57
CFAP54Q96N23 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.62■□□□□ 0.57
CFAP54Q96N23 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CFAP54Q96N23 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 SEC1P-202ENST00000473944 940 ntBASIC18.61■□□□□ 0.57
CFAP54Q96N23 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.61■□□□□ 0.57
CFAP54Q96N23 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CFAP54Q96N23 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 AL049840.3-201ENST00000602669 611 ntBASIC18.6■□□□□ 0.57
CFAP54Q96N23 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.6■□□□□ 0.57
CFAP54Q96N23 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CFAP54Q96N23 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CFAP54Q96N23 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.6■□□□□ 0.57
CFAP54Q96N23 MED15P5-201ENST00000423150 992 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms