Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
ERCC4Q92889 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC4Q92889 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC4Q92889 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC4Q92889 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC4Q92889 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
ERCC4Q92889 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
ERCC4Q92889 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.53■■□□□ 1.04
ERCC4Q92889 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
ERCC4Q92889 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC4Q92889 TUBB8P6-201ENST00000436895 1288 ntBASIC21.53■■□□□ 1.04
ERCC4Q92889 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
ERCC4Q92889 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.53■■□□□ 1.04
ERCC4Q92889 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.53■■□□□ 1.04
ERCC4Q92889 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC4Q92889 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
ERCC4Q92889 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC4Q92889 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC4Q92889 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC4Q92889 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.53■■□□□ 1.04
ERCC4Q92889 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC4Q92889 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC4Q92889 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
ERCC4Q92889 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
ERCC4Q92889 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC4Q92889 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC4Q92889 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
ERCC4Q92889 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.52■■□□□ 1.04
ERCC4Q92889 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.52■■□□□ 1.04
ERCC4Q92889 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
ERCC4Q92889 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
ERCC4Q92889 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC4Q92889 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
ERCC4Q92889 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC4Q92889 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
ERCC4Q92889 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.52■■□□□ 1.03
ERCC4Q92889 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
ERCC4Q92889 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
ERCC4Q92889 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.51■■□□□ 1.03
ERCC4Q92889 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
ERCC4Q92889 AC069152.1-201ENST00000438030 544 ntBASIC21.51■■□□□ 1.03
ERCC4Q92889 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.51■■□□□ 1.03
ERCC4Q92889 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.51■■□□□ 1.03
ERCC4Q92889 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.51■■□□□ 1.03
ERCC4Q92889 AC104771.1-201ENST00000603335 964 ntBASIC21.51■■□□□ 1.03
ERCC4Q92889 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.51■■□□□ 1.03
ERCC4Q92889 AL121829.2-201ENST00000620908 328 ntBASIC21.51■■□□□ 1.03
ERCC4Q92889 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
ERCC4Q92889 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC4Q92889 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.51■■□□□ 1.03
ERCC4Q92889 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.51■■□□□ 1.03
ERCC4Q92889 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 FEM1AP3-201ENST00000403722 1741 ntBASIC21.5■■□□□ 1.03
ERCC4Q92889 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
ERCC4Q92889 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
ERCC4Q92889 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.5■■□□□ 1.03
ERCC4Q92889 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.5■■□□□ 1.03
ERCC4Q92889 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms