Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 KRT18P56-201ENST00000507275 550 ntBASIC18.51■□□□□ 0.55
LMX1AQ8TE12 ZNF444P1-201ENST00000559497 298 ntBASIC18.51■□□□□ 0.55
LMX1AQ8TE12 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 AL023284.2-201ENST00000405850 579 ntBASIC18.5■□□□□ 0.55
LMX1AQ8TE12 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 AC036111.1-201ENST00000533973 1582 ntBASIC18.5■□□□□ 0.55
LMX1AQ8TE12 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
LMX1AQ8TE12 Z82202.1-201ENST00000623446 1880 ntBASIC18.5■□□□□ 0.55
LMX1AQ8TE12 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AL136038.3-201ENST00000561909 1096 ntBASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AC083849.1-201ENST00000615227 514 ntBASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AC116407.4-201ENST00000623319 1061 ntBASIC18.49■□□□□ 0.55
LMX1AQ8TE12 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.49■□□□□ 0.55
LMX1AQ8TE12 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 MCCD1P1-208ENST00000445732 328 ntBASIC18.48■□□□□ 0.55
LMX1AQ8TE12 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.48■□□□□ 0.55
LMX1AQ8TE12 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 AC024243.1-201ENST00000609234 778 ntBASIC18.48■□□□□ 0.55
LMX1AQ8TE12 HYMAI.1-201ENST00000620949 238 ntBASIC18.48■□□□□ 0.55
LMX1AQ8TE12 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1AQ8TE12 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms