Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AC004951.3-201ENST00000418645 1148 ntBASIC18.24■□□□□ 0.51
COL28A1Q2UY09 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AL023803.3-201ENST00000615559 522 ntBASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AL031008.1-201ENST00000619963 541 ntBASIC18.24■□□□□ 0.51
COL28A1Q2UY09 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 BX119927.1-201ENST00000636596 1552 ntBASIC18.23■□□□□ 0.51
COL28A1Q2UY09 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.23■□□□□ 0.51
COL28A1Q2UY09 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 AC079776.4-201ENST00000511039 504 ntBASIC18.23■□□□□ 0.51
COL28A1Q2UY09 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL28A1Q2UY09 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 EMBP1-201ENST00000458200 901 ntBASIC18.22■□□□□ 0.51
COL28A1Q2UY09 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 AL353719.1-201ENST00000566847 864 ntBASIC18.22■□□□□ 0.51
COL28A1Q2UY09 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 IFNL4P1-201ENST00000607083 540 ntBASIC18.22■□□□□ 0.51
COL28A1Q2UY09 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL28A1Q2UY09 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 KRT18P13-201ENST00000400056 1290 ntBASIC18.21■□□□□ 0.51
COL28A1Q2UY09 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 HYMAI.1-201ENST00000620949 238 ntBASIC18.21■□□□□ 0.51
COL28A1Q2UY09 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.21■□□□□ 0.51
COL28A1Q2UY09 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms