Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MIR1199-201ENST00000621445 119 ntBASIC11.79□□□□□ -0.52
HSPG2P98160 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 KRT18P23-201ENST00000435622 1283 ntBASIC11.78□□□□□ -0.52
HSPG2P98160 FGFR3P6-201ENST00000457012 610 ntBASIC11.78□□□□□ -0.52
HSPG2P98160 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
HSPG2P98160 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC11.78□□□□□ -0.52
HSPG2P98160 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC11.78□□□□□ -0.52
HSPG2P98160 AP001271.2-201ENST00000624018 1556 ntBASIC11.78□□□□□ -0.52
HSPG2P98160 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC11.78□□□□□ -0.52
HSPG2P98160 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HSPG2P98160 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC11.78□□□□□ -0.52
HSPG2P98160 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 PAM16-208ENST00000573553 722 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC11.78□□□□□ -0.52
HSPG2P98160 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HSPG2P98160 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 FAM197Y3-203ENST00000618346 717 ntBASIC11.78□□□□□ -0.52
HSPG2P98160 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.78□□□□□ -0.52
HSPG2P98160 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HSPG2P98160 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC11.78□□□□□ -0.52
HSPG2P98160 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC11.77□□□□□ -0.52
HSPG2P98160 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
HSPG2P98160 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC11.77□□□□□ -0.52
HSPG2P98160 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HSPG2P98160 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC11.77□□□□□ -0.52
HSPG2P98160 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HSPG2P98160 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
HSPG2P98160 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
HSPG2P98160 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 LINC01711-201ENST00000598340 967 ntBASIC11.77□□□□□ -0.53
HSPG2P98160 AL355877.3-201ENST00000622820 899 ntBASIC11.77□□□□□ -0.53
HSPG2P98160 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 COA5-202ENST00000409997 557 ntTSL 4 BASIC11.77□□□□□ -0.53
HSPG2P98160 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 SCARNA2-201ENST00000458748 420 ntBASIC11.77□□□□□ -0.53
HSPG2P98160 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC11.77□□□□□ -0.53
HSPG2P98160 AL356488.2-201ENST00000602755 427 ntBASIC11.77□□□□□ -0.53
HSPG2P98160 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC11.77□□□□□ -0.53
HSPG2P98160 Z98882.1-201ENST00000622160 2253 ntBASIC11.77□□□□□ -0.53
HSPG2P98160 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC11.77□□□□□ -0.53
HSPG2P98160 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HSPG2P98160 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC11.77□□□□□ -0.53
HSPG2P98160 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC11.77□□□□□ -0.53
HSPG2P98160 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC11.76□□□□□ -0.53
HSPG2P98160 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC11.76□□□□□ -0.53
HSPG2P98160 AC012640.2-201ENST00000561606 901 ntBASIC11.76□□□□□ -0.53
HSPG2P98160 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 METTL21AP1-201ENST00000438852 635 ntBASIC11.76□□□□□ -0.53
HSPG2P98160 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC11.76□□□□□ -0.53
HSPG2P98160 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC11.76□□□□□ -0.53
HSPG2P98160 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC11.76□□□□□ -0.53
HSPG2P98160 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 AC079834.2-201ENST00000609776 1949 ntBASIC11.76□□□□□ -0.53
HSPG2P98160 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC11.76□□□□□ -0.53
HSPG2P98160 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HSPG2P98160 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC11.76□□□□□ -0.53
HSPG2P98160 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC11.76□□□□□ -0.53
HSPG2P98160 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC11.76□□□□□ -0.53
HSPG2P98160 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
HSPG2P98160 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC11.76□□□□□ -0.53
HSPG2P98160 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms