Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 IRX1P1-201ENST00000438849 1838 ntBASIC17.59■□□□□ 0.41
RNF4P78317 FEM1AP3-201ENST00000403722 1741 ntBASIC17.59■□□□□ 0.41
RNF4P78317 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.59■□□□□ 0.41
RNF4P78317 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF4P78317 AC005363.2-201ENST00000618631 242 ntBASIC17.59■□□□□ 0.41
RNF4P78317 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF4P78317 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RNF4P78317 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RNF4P78317 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RNF4P78317 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RNF4P78317 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
RNF4P78317 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RNF4P78317 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RNF4P78317 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.58■□□□□ 0.4
RNF4P78317 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.58■□□□□ 0.4
RNF4P78317 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.58■□□□□ 0.4
RNF4P78317 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
RNF4P78317 AC010653.2-201ENST00000623505 997 ntBASIC17.58■□□□□ 0.4
RNF4P78317 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF4P78317 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF4P78317 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
RNF4P78317 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.58■□□□□ 0.4
RNF4P78317 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
RNF4P78317 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF4P78317 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.58■□□□□ 0.4
RNF4P78317 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.58■□□□□ 0.4
RNF4P78317 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF4P78317 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF4P78317 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RNF4P78317 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF4P78317 FP475955.4-201ENST00000623131 1990 ntBASIC17.57■□□□□ 0.4
RNF4P78317 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RNF4P78317 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.57■□□□□ 0.4
RNF4P78317 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RNF4P78317 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 SLC25A3P1-201ENST00000443844 931 ntBASIC17.57■□□□□ 0.4
RNF4P78317 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.57■□□□□ 0.4
RNF4P78317 FAM87A-204ENST00000613235 858 ntBASIC17.57■□□□□ 0.4
RNF4P78317 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
RNF4P78317 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF4P78317 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.56■□□□□ 0.4
RNF4P78317 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RNF4P78317 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF4P78317 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.56■□□□□ 0.4
RNF4P78317 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 AP003041.3-201ENST00000527151 707 ntBASIC17.56■□□□□ 0.4
RNF4P78317 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
RNF4P78317 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.56■□□□□ 0.4
RNF4P78317 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RNF4P78317 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RNF4P78317 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RNF4P78317 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF4P78317 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RNF4P78317 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF4P78317 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms