Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RORAP35398 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.06■□□□□ 0.48
RORAP35398 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RORAP35398 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RORAP35398 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.06■□□□□ 0.48
RORAP35398 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RORAP35398 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.06■□□□□ 0.48
RORAP35398 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RORAP35398 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.05■□□□□ 0.48
RORAP35398 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RORAP35398 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.05■□□□□ 0.48
RORAP35398 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 COX11P1-201ENST00000489116 835 ntBASIC18.05■□□□□ 0.48
RORAP35398 YBX1P2-201ENST00000489612 999 ntBASIC18.05■□□□□ 0.48
RORAP35398 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.05■□□□□ 0.48
RORAP35398 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RORAP35398 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RORAP35398 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RORAP35398 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.05■□□□□ 0.48
RORAP35398 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.05■□□□□ 0.48
RORAP35398 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.05■□□□□ 0.48
RORAP35398 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
RORAP35398 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
RORAP35398 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.04■□□□□ 0.48
RORAP35398 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 RNF152P1-201ENST00000397754 604 ntBASIC18.04■□□□□ 0.48
RORAP35398 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.04■□□□□ 0.48
RORAP35398 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.04■□□□□ 0.48
RORAP35398 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RORAP35398 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.04■□□□□ 0.48
RORAP35398 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RORAP35398 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.04■□□□□ 0.48
RORAP35398 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.04■□□□□ 0.48
RORAP35398 SDHAP1-207ENST00000440850 2000 ntBASIC18.04■□□□□ 0.48
RORAP35398 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RORAP35398 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RORAP35398 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.03■□□□□ 0.48
RORAP35398 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
RORAP35398 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 FAM8A6P-201ENST00000407496 1135 ntBASIC18.03■□□□□ 0.48
RORAP35398 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.03■□□□□ 0.48
RORAP35398 TSPY23P-201ENST00000440136 739 ntBASIC18.03■□□□□ 0.48
RORAP35398 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 AC087388.1-201ENST00000571370 1112 ntBASIC18.03■□□□□ 0.48
RORAP35398 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RORAP35398 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.03■□□□□ 0.48
RORAP35398 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.03■□□□□ 0.48
RORAP35398 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.03■□□□□ 0.48
RORAP35398 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
RORAP35398 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RORAP35398 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.02■□□□□ 0.48
RORAP35398 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 AL158211.5-201ENST00000623583 2518 ntBASIC18.02■□□□□ 0.48
RORAP35398 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RORAP35398 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
RORAP35398 TSPY21P-201ENST00000433481 731 ntBASIC18.02■□□□□ 0.48
RORAP35398 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.02■□□□□ 0.48
RORAP35398 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.02■□□□□ 0.48
RORAP35398 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RORAP35398 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.02■□□□□ 0.48
RORAP35398 LINC01238-205ENST00000567549 1107 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms