Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
COL5A3P25940 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.99■■□□□ 1.43
COL5A3P25940 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.99■■□□□ 1.43
COL5A3P25940 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL5A3P25940 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
COL5A3P25940 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.99■■□□□ 1.43
COL5A3P25940 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
COL5A3P25940 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.99■■□□□ 1.43
COL5A3P25940 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.98■■□□□ 1.43
COL5A3P25940 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC23.98■■□□□ 1.43
COL5A3P25940 AC120114.3-201ENST00000611923 658 ntBASIC23.98■■□□□ 1.43
COL5A3P25940 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC23.98■■□□□ 1.43
COL5A3P25940 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.98■■□□□ 1.43
COL5A3P25940 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
COL5A3P25940 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
COL5A3P25940 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.98■■□□□ 1.43
COL5A3P25940 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
COL5A3P25940 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.98■■□□□ 1.43
COL5A3P25940 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
COL5A3P25940 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
COL5A3P25940 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL5A3P25940 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
COL5A3P25940 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.97■■□□□ 1.43
COL5A3P25940 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 FOSL1P1-201ENST00000511041 816 ntBASIC23.97■■□□□ 1.43
COL5A3P25940 TP73-AS1-207ENST00000624167 988 ntBASIC23.97■■□□□ 1.43
COL5A3P25940 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
COL5A3P25940 Z83836.1-201ENST00000624605 1642 ntBASIC23.97■■□□□ 1.43
COL5A3P25940 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.97■■□□□ 1.43
COL5A3P25940 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL5A3P25940 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC23.97■■□□□ 1.43
COL5A3P25940 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.97■■□□□ 1.43
COL5A3P25940 RCC2P3-201ENST00000418112 1537 ntBASIC23.96■■□□□ 1.43
COL5A3P25940 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
COL5A3P25940 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC23.96■■□□□ 1.43
COL5A3P25940 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC23.96■■□□□ 1.43
COL5A3P25940 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.96■■□□□ 1.43
COL5A3P25940 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.96■■□□□ 1.43
COL5A3P25940 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC23.96■■□□□ 1.43
COL5A3P25940 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 KRT18P23-201ENST00000435622 1283 ntBASIC23.96■■□□□ 1.43
COL5A3P25940 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC23.96■■□□□ 1.43
COL5A3P25940 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL5A3P25940 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
COL5A3P25940 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC23.95■■□□□ 1.43
COL5A3P25940 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.95■■□□□ 1.42
COL5A3P25940 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL5A3P25940 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL5A3P25940 KRT16P4-201ENST00000453883 522 ntBASIC23.95■■□□□ 1.42
COL5A3P25940 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.95■■□□□ 1.42
COL5A3P25940 AL592071.1-201ENST00000611956 408 ntBASIC23.95■■□□□ 1.42
COL5A3P25940 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC23.95■■□□□ 1.42
COL5A3P25940 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
COL5A3P25940 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL5A3P25940 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.95■■□□□ 1.42
COL5A3P25940 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL5A3P25940 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.94■■□□□ 1.42
COL5A3P25940 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.94■■□□□ 1.42
COL5A3P25940 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.94■■□□□ 1.42
COL5A3P25940 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23.94■■□□□ 1.42
COL5A3P25940 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms