Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL9A1P20849 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL9A1P20849 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL9A1P20849 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL9A1P20849 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.55■□□□□ 0.72
COL9A1P20849 DNAJB3-202ENST00000449667 1266 ntBASIC19.55■□□□□ 0.72
COL9A1P20849 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.55■□□□□ 0.72
COL9A1P20849 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL9A1P20849 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
COL9A1P20849 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL9A1P20849 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL9A1P20849 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.55■□□□□ 0.72
COL9A1P20849 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL9A1P20849 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.55■□□□□ 0.72
COL9A1P20849 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.54■□□□□ 0.72
COL9A1P20849 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
COL9A1P20849 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.54■□□□□ 0.72
COL9A1P20849 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL9A1P20849 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.54■□□□□ 0.72
COL9A1P20849 CA15P1-201ENST00000481698 905 ntBASIC19.54■□□□□ 0.72
COL9A1P20849 AF238378.1-201ENST00000526806 358 ntBASIC19.54■□□□□ 0.72
COL9A1P20849 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.54■□□□□ 0.72
COL9A1P20849 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.54■□□□□ 0.72
COL9A1P20849 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.54■□□□□ 0.72
COL9A1P20849 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.54■□□□□ 0.72
COL9A1P20849 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 AL512408.1-201ENST00000569378 2000 ntBASIC19.54■□□□□ 0.72
COL9A1P20849 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.54■□□□□ 0.72
COL9A1P20849 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL9A1P20849 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.54■□□□□ 0.72
COL9A1P20849 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.53■□□□□ 0.72
COL9A1P20849 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL9A1P20849 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.53■□□□□ 0.72
COL9A1P20849 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.53■□□□□ 0.72
COL9A1P20849 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.53■□□□□ 0.72
COL9A1P20849 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.53■□□□□ 0.72
COL9A1P20849 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL9A1P20849 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.53■□□□□ 0.72
COL9A1P20849 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.53■□□□□ 0.72
COL9A1P20849 AC009065.1-201ENST00000564055 1225 ntBASIC19.53■□□□□ 0.72
COL9A1P20849 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.53■□□□□ 0.72
COL9A1P20849 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL9A1P20849 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL9A1P20849 AL691432.2-201ENST00000607222 2038 ntBASIC19.52■□□□□ 0.72
COL9A1P20849 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL9A1P20849 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.52■□□□□ 0.72
COL9A1P20849 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.52■□□□□ 0.72
COL9A1P20849 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL9A1P20849 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.52■□□□□ 0.72
COL9A1P20849 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.52■□□□□ 0.72
COL9A1P20849 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.52■□□□□ 0.72
COL9A1P20849 MIR1199-201ENST00000621445 119 ntBASIC19.52■□□□□ 0.72
COL9A1P20849 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL9A1P20849 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.52■□□□□ 0.72
COL9A1P20849 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL9A1P20849 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL9A1P20849 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.51■□□□□ 0.71
COL9A1P20849 KRT8P41-201ENST00000533985 1514 ntBASIC19.51■□□□□ 0.71
COL9A1P20849 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms