Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC116562.2-201ENST00000507042 360 ntBASIC22.44■■□□□ 1.18
HMGB1P09429 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
HMGB1P09429 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC22.44■■□□□ 1.18
HMGB1P09429 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.44■■□□□ 1.18
HMGB1P09429 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 CKBP1-201ENST00000565489 1086 ntBASIC22.44■■□□□ 1.18
HMGB1P09429 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.44■■□□□ 1.18
HMGB1P09429 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.44■■□□□ 1.18
HMGB1P09429 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
HMGB1P09429 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
HMGB1P09429 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.44■■□□□ 1.18
HMGB1P09429 AL049637.2-201ENST00000641778 930 ntBASIC22.44■■□□□ 1.18
HMGB1P09429 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
HMGB1P09429 AL138781.2-201ENST00000617896 1843 ntBASIC22.43■■□□□ 1.18
HMGB1P09429 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
HMGB1P09429 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC22.43■■□□□ 1.18
HMGB1P09429 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.43■■□□□ 1.18
HMGB1P09429 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 NUDT16P1-203ENST00000513809 620 ntBASIC22.43■■□□□ 1.18
HMGB1P09429 AP000692.2-201ENST00000608391 879 ntBASIC22.43■■□□□ 1.18
HMGB1P09429 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.43■■□□□ 1.18
HMGB1P09429 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HMGB1P09429 AL031598.1-201ENST00000561511 1773 ntBASIC22.43■■□□□ 1.18
HMGB1P09429 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
HMGB1P09429 Z98044.1-201ENST00000632503 1764 ntBASIC22.43■■□□□ 1.18
HMGB1P09429 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 KRT8P3-201ENST00000519669 1449 ntBASIC22.42■■□□□ 1.18
HMGB1P09429 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC22.42■■□□□ 1.18
HMGB1P09429 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.42■■□□□ 1.18
HMGB1P09429 DGCR10-201ENST00000609839 495 ntBASIC22.42■■□□□ 1.18
HMGB1P09429 AC113410.3-201ENST00000623366 203 ntBASIC22.42■■□□□ 1.18
HMGB1P09429 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC22.42■■□□□ 1.18
HMGB1P09429 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.42■■□□□ 1.18
HMGB1P09429 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGB1P09429 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGB1P09429 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.41■■□□□ 1.18
HMGB1P09429 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
HMGB1P09429 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGB1P09429 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGB1P09429 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
HMGB1P09429 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC22.41■■□□□ 1.18
HMGB1P09429 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.41■■□□□ 1.18
HMGB1P09429 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC22.41■■□□□ 1.18
HMGB1P09429 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 AL020996.1-203ENST00000536896 2307 ntBASIC22.41■■□□□ 1.18
HMGB1P09429 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGB1P09429 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGB1P09429 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC22.4■■□□□ 1.18
HMGB1P09429 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.4■■□□□ 1.18
HMGB1P09429 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.4■■□□□ 1.18
HMGB1P09429 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.4■■□□□ 1.18
HMGB1P09429 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC22.4■■□□□ 1.18
HMGB1P09429 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.4■■□□□ 1.18
HMGB1P09429 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.4■■□□□ 1.18
HMGB1P09429 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
HMGB1P09429 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
HMGB1P09429 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.4■■□□□ 1.18
HMGB1P09429 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGB1P09429 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.39■■□□□ 1.18
HMGB1P09429 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
HMGB1P09429 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.39■■□□□ 1.18
HMGB1P09429 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms