Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 BX119927.1-201ENST00000636596 1552 ntBASIC17.2■□□□□ 0.34
SSX4O60224 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.2■□□□□ 0.34
SSX4O60224 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SSX4O60224 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 SNORA78-201ENST00000459373 127 ntBASIC17.2■□□□□ 0.34
SSX4O60224 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.2■□□□□ 0.34
SSX4O60224 AC006557.6-201ENST00000623071 864 ntBASIC17.2■□□□□ 0.34
SSX4O60224 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SSX4O60224 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
SSX4O60224 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SSX4O60224 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.19■□□□□ 0.34
SSX4O60224 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SSX4O60224 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.19■□□□□ 0.34
SSX4O60224 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SSX4O60224 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.19■□□□□ 0.34
SSX4O60224 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SSX4O60224 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.19■□□□□ 0.34
SSX4O60224 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.19■□□□□ 0.34
SSX4O60224 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.19■□□□□ 0.34
SSX4O60224 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.19■□□□□ 0.34
SSX4O60224 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.19■□□□□ 0.34
SSX4O60224 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSX4O60224 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SSX4O60224 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.18■□□□□ 0.34
SSX4O60224 AC090164.3-201ENST00000610780 2143 ntBASIC17.18■□□□□ 0.34
SSX4O60224 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.18■□□□□ 0.34
SSX4O60224 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
SSX4O60224 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SSX4O60224 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 AL390719.1-204ENST00000412397 1219 ntBASIC17.18■□□□□ 0.34
SSX4O60224 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SSX4O60224 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.18■□□□□ 0.34
SSX4O60224 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.18■□□□□ 0.34
SSX4O60224 AL356652.1-201ENST00000615962 565 ntBASIC17.18■□□□□ 0.34
SSX4O60224 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SSX4O60224 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SSX4O60224 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.18■□□□□ 0.34
SSX4O60224 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSX4O60224 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SSX4O60224 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.17■□□□□ 0.34
SSX4O60224 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms