Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SDCBPO00560 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.17■□□□□ 0.18
SDCBPO00560 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SDCBPO00560 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
SDCBPO00560 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.17■□□□□ 0.18
SDCBPO00560 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SDCBPO00560 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 TFP1-202ENST00000475455 1573 ntBASIC16.17■□□□□ 0.18
SDCBPO00560 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDCBPO00560 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 Z98044.1-201ENST00000632503 1764 ntBASIC16.16■□□□□ 0.18
SDCBPO00560 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.16■□□□□ 0.18
SDCBPO00560 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.16■□□□□ 0.18
SDCBPO00560 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.16■□□□□ 0.18
SDCBPO00560 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SDCBPO00560 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
SDCBPO00560 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.16■□□□□ 0.18
SDCBPO00560 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.16■□□□□ 0.18
SDCBPO00560 AL121906.2-201ENST00000621597 723 ntBASIC16.16■□□□□ 0.18
SDCBPO00560 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.16■□□□□ 0.18
SDCBPO00560 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SDCBPO00560 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDCBPO00560 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.15■□□□□ 0.18
SDCBPO00560 SDHAP1-207ENST00000440850 2000 ntBASIC16.15■□□□□ 0.18
SDCBPO00560 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.15■□□□□ 0.18
SDCBPO00560 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.15■□□□□ 0.18
SDCBPO00560 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.15■□□□□ 0.18
SDCBPO00560 AC142086.2-201ENST00000569753 217 ntBASIC16.15■□□□□ 0.18
SDCBPO00560 SOX15-203ENST00000570788 1093 ntBASIC16.15■□□□□ 0.18
SDCBPO00560 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.15■□□□□ 0.18
SDCBPO00560 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 AC079598.2-202ENST00000546624 1451 ntBASIC16.15■□□□□ 0.18
SDCBPO00560 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SDCBPO00560 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SDCBPO00560 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SDCBPO00560 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.14■□□□□ 0.17
SDCBPO00560 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 HLA-L-209ENST00000420110 1011 ntBASIC16.14■□□□□ 0.17
SDCBPO00560 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.14■□□□□ 0.17
SDCBPO00560 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16.14■□□□□ 0.17
SDCBPO00560 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.14■□□□□ 0.17
SDCBPO00560 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.14■□□□□ 0.17
SDCBPO00560 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 AL512353.2-201ENST00000448759 1962 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms