Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGN4O00479 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGN4O00479 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGN4O00479 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 ANO7L1-203ENST00000602586 1720 ntBASIC17.69■□□□□ 0.42
HMGN4O00479 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGN4O00479 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 NIFKP9-201ENST00000419265 221 ntBASIC17.68■□□□□ 0.42
HMGN4O00479 POU5F1P3-201ENST00000428824 1078 ntBASIC17.68■□□□□ 0.42
HMGN4O00479 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 AC128676.1-201ENST00000454392 318 ntBASIC17.68■□□□□ 0.42
HMGN4O00479 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGN4O00479 MIR4651-201ENST00000582622 73 ntBASIC17.68■□□□□ 0.42
HMGN4O00479 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGN4O00479 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGN4O00479 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGN4O00479 AC005082.1-201ENST00000413042 2259 ntBASIC17.68■□□□□ 0.42
HMGN4O00479 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
HMGN4O00479 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGN4O00479 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGN4O00479 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGN4O00479 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGN4O00479 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 AC004980.1-204ENST00000429707 299 ntBASIC17.67■□□□□ 0.42
HMGN4O00479 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGN4O00479 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGN4O00479 CD99P1-205ENST00000527459 561 ntBASIC17.67■□□□□ 0.42
HMGN4O00479 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGN4O00479 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGN4O00479 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGN4O00479 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGN4O00479 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HMGN4O00479 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGN4O00479 AC090164.3-201ENST00000610780 2143 ntBASIC17.66■□□□□ 0.42
HMGN4O00479 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 KRT8P11-201ENST00000409686 1436 ntBASIC17.66■□□□□ 0.42
HMGN4O00479 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGN4O00479 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGN4O00479 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGN4O00479 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGN4O00479 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGN4O00479 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGN4O00479 AL353708.3-201ENST00000610272 989 ntBASIC17.66■□□□□ 0.42
HMGN4O00479 AC131212.4-201ENST00000623606 975 ntBASIC17.66■□□□□ 0.42
HMGN4O00479 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGN4O00479 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGN4O00479 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms