Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC25.64■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC006538.3-201ENST00000612495 578 ntBASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FP475955.4-201ENST00000623131 1990 ntBASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC25.62■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HLA-A-209ENST00000638375 975 ntBASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC104581.1-202ENST00000635932 2618 ntBASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC25.6■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms