Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 U2.10-201ENST00000620268 191 ntBASIC5.06□□□□□ -1.6
SH3RF1Q7Z6J0 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SH3RF1Q7Z6J0 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SH3RF1Q7Z6J0 AC092593.1-201ENST00000515413 1815 ntBASIC5.06□□□□□ -1.6
SH3RF1Q7Z6J0 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SH3RF1Q7Z6J0 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 MAPK10-349ENST00000641767 3661 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 Y_RNA.75-201ENST00000362927 97 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 Y_RNA.121-201ENST00000363309 113 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RNA5SP387-201ENST00000364226 106 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RNU6-1248P-201ENST00000391096 64 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 SNORA11F-201ENST00000408237 128 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RNA5SP146-201ENST00000410743 123 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RNA5SP31-201ENST00000411144 127 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 SNORA74C-2-201ENST00000411179 201 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 MTND4LP9-201ENST00000427694 174 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 IFNA11P-201ENST00000446352 526 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 PARP4P3-201ENST00000510265 317 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 AC091874.1-201ENST00000511402 339 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RNU6-191P-201ENST00000516295 94 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 Y_RNA.686-201ENST00000516548 134 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 AC100770.1-201ENST00000532310 322 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 RPL23AP97-201ENST00000568955 471 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 MIR548X2-201ENST00000579776 100 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 AL008718.3-201ENST00000610217 321 ntBASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SH3RF1Q7Z6J0 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 AC110774.1-201ENST00000623567 2018 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 AL391516.1-201ENST00000554380 2449 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 RNA5SP307-201ENST00000362863 116 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 RNU4-80P-201ENST00000363200 141 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 RNA5SP22-201ENST00000365393 109 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 RNU4-17P-201ENST00000365598 141 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 Y_RNA.412-201ENST00000384001 104 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 U8.10-201ENST00000384260 133 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 RNU6-628P-201ENST00000410675 107 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 BTF3P11-201ENST00000426582 477 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 SNRPEP9-201ENST00000436794 238 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 TRAV8-5-201ENST00000537369 341 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 MED28P6-201ENST00000558776 231 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 ZNF192P1-203ENST00000565888 810 ntBASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.04□□□□□ -1.6
SH3RF1Q7Z6J0 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 Z73965.1-201ENST00000623412 2297 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 SNORA62.3-201ENST00000365110 153 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 RNU6-80P-201ENST00000384195 107 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 RNU1-44P-201ENST00000384453 163 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 RNY4P18-201ENST00000391107 89 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 SNORA11.1-201ENST00000408133 129 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AL358075.3-201ENST00000426289 226 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 GPM6BP3-201ENST00000442797 145 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 UBE2CP3-201ENST00000502715 450 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 LINC00933-203ENST00000559812 219 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC006254.2-201ENST00000603259 279 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC010999.1-201ENST00000611856 324 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 MIR7154-201ENST00000620673 73 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC006065.5-201ENST00000623427 349 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 AC048347.1-201ENST00000624621 427 ntBASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.03□□□□□ -1.6
SH3RF1Q7Z6J0 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.02□□□□□ -1.61
SH3RF1Q7Z6J0 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms