Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.93□□□□□ -1.78
RNF4P78317 SNORD115-32-201ENST00000364079 82 ntBASIC3.93□□□□□ -1.78
RNF4P78317 Y_RNA.269-201ENST00000364685 89 ntBASIC3.93□□□□□ -1.78
RNF4P78317 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
RNF4P78317 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.93□□□□□ -1.78
RNF4P78317 MIR888-201ENST00000401186 77 ntBASIC3.93□□□□□ -1.78
RNF4P78317 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.93□□□□□ -1.78
RNF4P78317 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.93□□□□□ -1.78
RNF4P78317 EIF1P2-201ENST00000428233 350 ntBASIC3.93□□□□□ -1.78
RNF4P78317 COX6B1P7-201ENST00000430845 235 ntBASIC3.93□□□□□ -1.78
RNF4P78317 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.93□□□□□ -1.78
RNF4P78317 AC016700.2-201ENST00000446011 156 ntBASIC3.93□□□□□ -1.78
RNF4P78317 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 RNU6-496P-201ENST00000516145 99 ntBASIC3.93□□□□□ -1.78
RNF4P78317 RNU6-581P-201ENST00000516214 105 ntBASIC3.93□□□□□ -1.78
RNF4P78317 RNU6-182P-201ENST00000516970 105 ntBASIC3.93□□□□□ -1.78
RNF4P78317 MRPL49P2-201ENST00000521066 465 ntBASIC3.93□□□□□ -1.78
RNF4P78317 AC100770.1-201ENST00000532310 322 ntBASIC3.93□□□□□ -1.78
RNF4P78317 AP004242.1-201ENST00000533701 349 ntBASIC3.93□□□□□ -1.78
RNF4P78317 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.93□□□□□ -1.78
RNF4P78317 AL451007.1-201ENST00000595491 289 ntBASIC3.93□□□□□ -1.78
RNF4P78317 MIR8059-201ENST00000620427 81 ntBASIC3.93□□□□□ -1.78
RNF4P78317 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.93□□□□□ -1.78
RNF4P78317 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.93□□□□□ -1.78
RNF4P78317 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
RNF4P78317 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
RNF4P78317 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
RNF4P78317 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 RNU1-15P-201ENST00000353977 144 ntBASIC3.92□□□□□ -1.78
RNF4P78317 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
RNF4P78317 Y_RNA.297-201ENST00000364950 91 ntBASIC3.92□□□□□ -1.78
RNF4P78317 RNU6-541P-201ENST00000384709 110 ntBASIC3.92□□□□□ -1.78
RNF4P78317 MIR544A-201ENST00000384855 91 ntBASIC3.92□□□□□ -1.78
RNF4P78317 AL138878.1-201ENST00000405131 347 ntBASIC3.92□□□□□ -1.78
RNF4P78317 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 RPS29P19-201ENST00000479709 171 ntBASIC3.92□□□□□ -1.78
RNF4P78317 AC099522.1-202ENST00000514718 367 ntBASIC3.92□□□□□ -1.78
RNF4P78317 RNU6-1114P-201ENST00000516022 107 ntBASIC3.92□□□□□ -1.78
RNF4P78317 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.92□□□□□ -1.78
RNF4P78317 AC026470.2-201ENST00000561492 181 ntBASIC3.92□□□□□ -1.78
RNF4P78317 AL512605.2-201ENST00000592972 256 ntBASIC3.92□□□□□ -1.78
RNF4P78317 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
RNF4P78317 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.92□□□□□ -1.78
RNF4P78317 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
RNF4P78317 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
RNF4P78317 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
RNF4P78317 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 AL353743.1-202ENST00000431724 1695 ntBASIC3.91□□□□□ -1.78
RNF4P78317 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.91□□□□□ -1.78
RNF4P78317 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
RNF4P78317 SNORA36A-201ENST00000384221 132 ntBASIC3.91□□□□□ -1.78
RNF4P78317 Y_RNA.785-201ENST00000384290 109 ntBASIC3.91□□□□□ -1.78
RNF4P78317 SNORA70C-201ENST00000384538 135 ntBASIC3.91□□□□□ -1.78
RNF4P78317 RPS4XP3-201ENST00000398541 413 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 MIR1179-201ENST00000408703 91 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.91□□□□□ -1.78
RNF4P78317 AC074117.2-201ENST00000417130 397 ntBASIC3.91□□□□□ -1.78
RNF4P78317 RPL23AP95-201ENST00000426806 265 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AC017083.1-201ENST00000428093 483 ntBASIC3.91□□□□□ -1.78
RNF4P78317 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
RNF4P78317 RPL23AP46-201ENST00000438548 490 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AC007969.2-201ENST00000441891 191 ntBASIC3.91□□□□□ -1.78
RNF4P78317 HMGN2P7-201ENST00000456186 273 ntBASIC3.91□□□□□ -1.78
RNF4P78317 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
RNF4P78317 RPS23P5-201ENST00000495419 428 ntBASIC3.91□□□□□ -1.78
RNF4P78317 RNU4-71P-201ENST00000516258 113 ntBASIC3.91□□□□□ -1.78
RNF4P78317 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 AC069240.1-201ENST00000548774 375 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AC025884.1-201ENST00000556034 378 ntBASIC3.91□□□□□ -1.78
RNF4P78317 UBL5P4-201ENST00000562584 236 ntBASIC3.91□□□□□ -1.78
RNF4P78317 MIR5695-201ENST00000579717 85 ntBASIC3.91□□□□□ -1.78
RNF4P78317 AC244505.7-201ENST00000599675 272 ntBASIC3.91□□□□□ -1.78
RNF4P78317 BX284668.6-201ENST00000606899 438 ntBASIC3.91□□□□□ -1.78
RNF4P78317 MIR6798-201ENST00000612887 67 ntBASIC3.91□□□□□ -1.78
RNF4P78317 MIR4727-201ENST00000622232 55 ntBASIC3.91□□□□□ -1.78
RNF4P78317 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
RNF4P78317 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
RNF4P78317 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
RNF4P78317 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms