Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
RPS28P62857 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.52□□□□□ -2.33
RPS28P62857 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC0.52□□□□□ -2.33
RPS28P62857 AC004817.2-201ENST00000561794 651 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.52□□□□□ -2.33
RPS28P62857 MIR1273D-201ENST00000577266 86 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC126365.2-201ENST00000580630 379 ntBASIC0.52□□□□□ -2.33
RPS28P62857 MTCO2P2-201ENST00000591258 225 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC087241.4-201ENST00000612441 480 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC063943.3-201ENST00000615562 356 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC110994.2-201ENST00000635481 492 ntBASIC0.52□□□□□ -2.33
RPS28P62857 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.51□□□□□ -2.33
RPS28P62857 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
RPS28P62857 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
RPS28P62857 SNORD114-2-201ENST00000363953 78 ntBASIC0.51□□□□□ -2.33
RPS28P62857 SNORA40C-201ENST00000391285 128 ntBASIC0.51□□□□□ -2.33
RPS28P62857 RNU2-23P-201ENST00000410545 195 ntBASIC0.51□□□□□ -2.33
RPS28P62857 RPL21P90-201ENST00000415692 466 ntBASIC0.51□□□□□ -2.33
RPS28P62857 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 DPH3P2-201ENST00000422618 250 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.51□□□□□ -2.33
RPS28P62857 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.51□□□□□ -2.33
RPS28P62857 RPS15AP10-201ENST00000432472 382 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC0.51□□□□□ -2.33
RPS28P62857 TIMM9P1-201ENST00000436122 256 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 HMGN1P5-201ENST00000448591 263 ntBASIC0.51□□□□□ -2.33
RPS28P62857 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
RPS28P62857 RPL30P12-201ENST00000474666 353 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AC026414.1-201ENST00000504046 698 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 RNU4-29P-201ENST00000515943 174 ntBASIC0.51□□□□□ -2.33
RPS28P62857 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
RPS28P62857 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.51□□□□□ -2.33
RPS28P62857 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.51□□□□□ -2.33
RPS28P62857 AC107304.1-201ENST00000604229 296 ntBASIC0.51□□□□□ -2.33
RPS28P62857 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.51□□□□□ -2.33
RPS28P62857 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.51□□□□□ -2.33
RPS28P62857 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
RPS28P62857 AC040896.1-201ENST00000613819 479 ntBASIC0.51□□□□□ -2.33
RPS28P62857 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
RPS28P62857 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.5□□□□□ -2.33
RPS28P62857 GNG5P1-201ENST00000255500 204 ntBASIC0.5□□□□□ -2.33
RPS28P62857 SNORD114-24-201ENST00000365029 72 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC083799.1-201ENST00000366451 910 ntBASIC0.5□□□□□ -2.33
RPS28P62857 SNORA40.18-201ENST00000391200 128 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC004965.1-201ENST00000413033 213 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC016831.2-201ENST00000417179 352 ntBASIC0.5□□□□□ -2.33
RPS28P62857 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.5□□□□□ -2.33
RPS28P62857 MTCO1P3-201ENST00000429327 192 ntBASIC0.5□□□□□ -2.33
RPS28P62857 TXNL1P1-201ENST00000429528 554 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC0.5□□□□□ -2.33
RPS28P62857 AL606517.1-201ENST00000446914 387 ntBASIC0.5□□□□□ -2.33
RPS28P62857 MTND1P31-201ENST00000449206 961 ntBASIC0.5□□□□□ -2.33
RPS28P62857 snoU13.14-201ENST00000459372 104 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.5□□□□□ -2.33
RPS28P62857 RPF2P2-201ENST00000504693 896 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC010468.3-201ENST00000508225 458 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.5□□□□□ -2.33
RPS28P62857 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC0.5□□□□□ -2.33
RPS28P62857 SNORD60.2-201ENST00000516883 86 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.5□□□□□ -2.33
RPS28P62857 SNRPGP1-201ENST00000553864 222 ntBASIC0.5□□□□□ -2.33
RPS28P62857 MIR3664-201ENST00000579074 99 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AL390838.2-201ENST00000602394 274 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AL391001.1-201ENST00000602747 715 ntBASIC0.5□□□□□ -2.33
RPS28P62857 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AP003485.2-201ENST00000623636 610 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AL356094.1-201ENST00000624663 1212 ntBASIC0.5□□□□□ -2.33
RPS28P62857 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.5□□□□□ -2.33
RPS28P62857 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
RPS28P62857 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
RPS28P62857 MTND4P21-201ENST00000453886 1357 ntBASIC0.49□□□□□ -2.33
RPS28P62857 AC092881.1-201ENST00000638218 2733 ntBASIC0.49□□□□□ -2.33
RPS28P62857 RNA5SP289-201ENST00000362332 137 ntBASIC0.49□□□□□ -2.33
RPS28P62857 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
RPS28P62857 AL356967.1-201ENST00000406305 431 ntBASIC0.49□□□□□ -2.33
RPS28P62857 AL807761.1-201ENST00000417622 171 ntBASIC0.49□□□□□ -2.33
RPS28P62857 YME1L1P1-201ENST00000429435 297 ntBASIC0.49□□□□□ -2.33
RPS28P62857 HMGB3P12-201ENST00000438745 556 ntBASIC0.49□□□□□ -2.33
RPS28P62857 TRBVA-201ENST00000498804 316 ntBASIC0.49□□□□□ -2.33
RPS28P62857 AC114781.4-201ENST00000513707 639 ntBASIC0.49□□□□□ -2.33
RPS28P62857 SNORA25.15-201ENST00000516487 89 ntBASIC0.49□□□□□ -2.33
RPS28P62857 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC0.49□□□□□ -2.33
RPS28P62857 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC0.49□□□□□ -2.33
RPS28P62857 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC0.49□□□□□ -2.33
RPS28P62857 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.49□□□□□ -2.33
RPS28P62857 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC0.49□□□□□ -2.33
RPS28P62857 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.49□□□□□ -2.33
RPS28P62857 AC110588.1-201ENST00000559699 137 ntBASIC0.49□□□□□ -2.33
RPS28P62857 AC060771.1-201ENST00000582031 164 ntBASIC0.49□□□□□ -2.33
RPS28P62857 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC0.49□□□□□ -2.33
RPS28P62857 BX323046.1-201ENST00000610145 535 ntBASIC0.49□□□□□ -2.33
RPS28P62857 AC106800.4-201ENST00000614905 153 ntBASIC0.49□□□□□ -2.33
RPS28P62857 PCNP-208ENST00000627393 136 ntTSL 2 BASIC0.49□□□□□ -2.33
RPS28P62857 AC010615.1-201ENST00000594254 1764 ntBASIC0.49□□□□□ -2.33
RPS28P62857 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.48□□□□□ -2.33
RPS28P62857 RNU6-707P-201ENST00000364647 95 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms