Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR2116-201ENST00000517221 80 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AC027369.5-201ENST00000533838 755 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AL356157.2-201ENST00000605122 111 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AC131238.1-201ENST00000617135 328 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.27□□□□□ -1.73
COL8A1P27658 SNORA43.4-201ENST00000629559 138 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 MIR4496-201ENST00000635896 61 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL8A1P27658 AC090971.4-201ENST00000560291 1800 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AC092376.2-201ENST00000622621 4116 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL8A1P27658 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 AC083899.1-201ENST00000454465 3819 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL8A1P27658 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.27□□□□□ -1.73
COL8A1P27658 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL8A1P27658 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 AC025031.4-201ENST00000621248 3271 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL8A1P27658 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL8A1P27658 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 Y_RNA.179-201ENST00000363844 90 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RNU6-1048P-201ENST00000364054 107 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RNU6-1082P-201ENST00000364574 107 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 SNORD32A-201ENST00000364805 84 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 SNORA62.3-201ENST00000365110 153 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RNU6-597P-201ENST00000365620 102 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 SNORA72.4-201ENST00000384174 132 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 MT-TT-201ENST00000387460 66 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AL606845.1-201ENST00000404881 255 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 SNORA77-201ENST00000408716 125 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 NDUFB4P8-201ENST00000435351 367 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AL135790.2-201ENST00000437701 267 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AC243964.1-201ENST00000441814 261 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.26□□□□□ -1.73
COL8A1P27658 RNU6-561P-201ENST00000516222 102 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RNU6-572P-201ENST00000516724 80 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RNA5SP392-201ENST00000516905 112 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 IGLVIV-65-201ENST00000517313 360 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 RPL23AP53-201ENST00000521854 457 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.26□□□□□ -1.73
COL8A1P27658 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.26□□□□□ -1.73
COL8A1P27658 MIR5571-201ENST00000577998 113 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AC012640.5-201ENST00000623897 319 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AC099654.7-201ENST00000635788 2127 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 MIR3674-201ENST00000636576 68 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 AL596275.2-206ENST00000641957 626 ntBASIC4.26□□□□□ -1.73
COL8A1P27658 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.26□□□□□ -1.73
COL8A1P27658 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL8A1P27658 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.26□□□□□ -1.73
COL8A1P27658 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 STX3-208ENST00000641815 3236 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.25□□□□□ -1.73
COL8A1P27658 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.25□□□□□ -1.73
COL8A1P27658 RNU6-356P-201ENST00000384140 107 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 SNORA20B-201ENST00000384220 132 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RNU6-49P-201ENST00000384256 107 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 U3.40-201ENST00000408706 208 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RNU4-43P-201ENST00000410628 137 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RNU6-1245P-201ENST00000411130 106 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RPL26P27-201ENST00000414397 437 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 PHBP16-201ENST00000446318 950 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 AC006026.2-201ENST00000457376 180 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RN7SL542P-201ENST00000467147 294 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.25□□□□□ -1.73
COL8A1P27658 AC006199.1-201ENST00000548728 219 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 MIR4444-1-201ENST00000581696 74 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 MIR4444-2-201ENST00000584390 74 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.25□□□□□ -1.73
COL8A1P27658 AC062037.1-201ENST00000605302 128 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.25□□□□□ -1.73
COL8A1P27658 BX005214.3-202ENST00000619809 325 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 RNA5SP196-201ENST00000625967 102 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 AC004817.4-201ENST00000602396 3625 ntBASIC4.25□□□□□ -1.73
COL8A1P27658 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.25□□□□□ -1.73
COL8A1P27658 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL8A1P27658 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.25□□□□□ -1.73
COL8A1P27658 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
COL8A1P27658 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.24□□□□□ -1.73
COL8A1P27658 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
COL8A1P27658 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.24□□□□□ -1.73
COL8A1P27658 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 Y_RNA.114-201ENST00000363265 113 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNU6-324P-201ENST00000363957 106 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 Y_RNA.245-201ENST00000364493 95 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 SNORA2.3-201ENST00000383920 135 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms