Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU1-30P-201ENST00000606575 163 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MIR5701-2-201ENST00000615634 82 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 HMGB1P37-201ENST00000439613 609 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 HMGN2P21-201ENST00000447764 270 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 RPS3AP46-201ENST00000448352 682 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 BX510359.1-201ENST00000456973 237 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 SNORA70.16-201ENST00000516390 95 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 TRAV28-201ENST00000557548 323 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 AL158827.2-201ENST00000602494 330 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 AL691447.3-201ENST00000635020 330 ntBASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC87Q9NVE4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AL049781.1-201ENST00000623195 3585 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.307-201ENST00000365022 117 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 RNU6-784P-201ENST00000384330 106 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 RNU2-68P-201ENST00000410878 191 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 PCNPP5-201ENST00000452246 481 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AC013470.1-201ENST00000453438 462 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 RNU2-53P-201ENST00000516257 147 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 RNA5SP164-201ENST00000516533 110 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 SNORA31.19-201ENST00000517079 126 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 RPS29P30-201ENST00000600975 111 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AL139395.1-201ENST00000603662 160 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 MTND4LP5-201ENST00000605152 292 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 HMGB1P50-201ENST00000605814 607 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 AL161629.2-201ENST00000615347 275 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 HMGB1P24-202ENST00000615653 685 ntBASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC87Q9NVE4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.512-201ENST00000384518 102 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 MTCYBP2-201ENST00000407745 171 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 ATP5A1P2-201ENST00000412323 255 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 RPL21P2-201ENST00000440049 481 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 PIGFP3-201ENST00000441918 722 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AL078601.1-201ENST00000444542 271 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC009237.8-201ENST00000445492 379 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 KC877373.1-201ENST00000479066 408 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 RPL30P10-201ENST00000488148 337 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 Vault.1-201ENST00000516474 102 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 RN7SKP57-201ENST00000517248 293 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC091144.1-201ENST00000519573 138 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 OR5D17P-201ENST00000531492 978 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC125232.2-201ENST00000592457 143 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 AC027309.3-201ENST00000623419 351 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 SCARNA15.3-201ENST00000626315 122 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 SCARNA4.1-201ENST00000628597 123 ntBASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC87Q9NVE4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 OR56A5-201ENST00000340110 738 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.257-201ENST00000364596 102 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 SNORA69.1-201ENST00000390904 137 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 MIR1302-6-201ENST00000408466 90 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms