Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SMG1P4-204ENST00000523028 4131 ntBASIC5.4□□□□□ -1.55
COL9A1P20849 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
COL9A1P20849 AC068769.1-201ENST00000474767 2426 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL9A1P20849 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL9A1P20849 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.39□□□□□ -1.55
COL9A1P20849 SNORA71.3-201ENST00000362582 128 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RNU6-727P-201ENST00000363592 107 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RNA5SP447-201ENST00000363749 119 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RNU6-454P-201ENST00000364292 107 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 SNORA9-201ENST00000384215 133 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 MIR600-201ENST00000385007 98 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RNA5SP113-201ENST00000410486 84 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RPL12P18-201ENST00000437175 325 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RPL26P9-201ENST00000457466 433 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 MED28P6-201ENST00000558776 231 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 SNRPGP20-201ENST00000604477 205 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC5.39□□□□□ -1.55
COL9A1P20849 AL121890.5-201ENST00000620848 304 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL9A1P20849 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL9A1P20849 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.39□□□□□ -1.55
COL9A1P20849 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL9A1P20849 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL9A1P20849 AL133383.2-201ENST00000622958 2336 ntBASIC5.39□□□□□ -1.55
COL9A1P20849 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.38□□□□□ -1.55
COL9A1P20849 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.38□□□□□ -1.55
COL9A1P20849 MIR367-201ENST00000362299 68 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 RNU6-799P-201ENST00000363567 107 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 SNORD115-30-201ENST00000364117 82 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 SNORA26.2-201ENST00000390922 122 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.38□□□□□ -1.55
COL9A1P20849 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.38□□□□□ -1.55
COL9A1P20849 RNU4-60P-201ENST00000517239 135 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 AC060780.2-201ENST00000589047 198 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 AL359955.1-201ENST00000455242 3275 ntBASIC5.38□□□□□ -1.55
COL9A1P20849 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL9A1P20849 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.38□□□□□ -1.55
COL9A1P20849 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
COL9A1P20849 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.37□□□□□ -1.55
COL9A1P20849 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
COL9A1P20849 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL9A1P20849 Y_RNA.120-201ENST00000363304 110 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 RNU6-1082P-201ENST00000364574 107 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 Y_RNA.341-201ENST00000365341 102 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 SNORA70C-201ENST00000384538 135 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 AL357515.1-201ENST00000402967 542 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.37□□□□□ -1.55
COL9A1P20849 CKS1BP7-201ENST00000522230 235 ntBASIC5.37□□□□□ -1.55
COL9A1P20849 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.37□□□□□ -1.55
COL9A1P20849 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.37□□□□□ -1.55
COL9A1P20849 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
COL9A1P20849 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL9A1P20849 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
COL9A1P20849 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.37□□□□□ -1.55
COL9A1P20849 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.36□□□□□ -1.55
COL9A1P20849 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL9A1P20849 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 RNA5SP191-201ENST00000362585 102 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNU1-146P-201ENST00000364015 165 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 U8.6-201ENST00000364939 135 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNA5SP235-201ENST00000365411 114 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNU6-855P-201ENST00000410395 104 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNY4P29-201ENST00000410801 97 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 Y_RNA.630-201ENST00000411370 108 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RPS12P10-201ENST00000427031 377 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RPL23AP1-201ENST00000428990 471 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 KRT8P51-201ENST00000438938 274 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNU7-141P-201ENST00000459304 62 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 SNORD125-201ENST00000459538 96 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RN7SL132P-201ENST00000478131 296 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RN7SKP260-201ENST00000516907 149 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 RNU1-45P-201ENST00000517191 141 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.36□□□□□ -1.55
COL9A1P20849 AC008739.3-201ENST00000603262 127 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 AC025946.2-201ENST00000603398 234 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.36□□□□□ -1.55
COL9A1P20849 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL9A1P20849 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL9A1P20849 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms