Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 SKA2P1-201ENST00000425592 390 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AL358934.1-201ENST00000432346 324 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RPL23AP30-201ENST00000432419 501 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RPL36AP53-201ENST00000432891 316 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 MTATP6P16-201ENST00000434543 526 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RPL23AP20-201ENST00000447965 421 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC093899.1-201ENST00000457984 376 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 SUMO2P6-201ENST00000505273 288 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 MTCO2P4-201ENST00000517968 247 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AL359212.1-201ENST00000556608 614 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC174048.1-201ENST00000603389 144 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC091834.1-201ENST00000614543 472 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 AC092656.1-203ENST00000624134 423 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 Z99571.1-201ENST00000636677 394 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 ASNSP3-201ENST00000451989 1306 ntBASIC2.89□□□□□ -1.95
CPSF3Q9UKF6 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 RNU6-778P-201ENST00000363269 103 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 SNORA68.1-201ENST00000364537 132 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 RNU6-641P-201ENST00000384006 107 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 SNORA24.1-201ENST00000384401 135 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AL109913.1-201ENST00000421173 514 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 PIGFP2-201ENST00000421400 651 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC133104.1-201ENST00000429100 218 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 MTCO3P5-201ENST00000433620 714 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 MRPS17P3-201ENST00000465453 385 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC139453.3-201ENST00000493276 369 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC098799.2-201ENST00000509466 868 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC108078.2-201ENST00000510750 236 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 Y_RNA.689-201ENST00000516589 107 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 RN7SKP40-201ENST00000517211 242 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 GLYCAM1-201ENST00000546596 285 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 MTCO3P13-201ENST00000577757 781 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 BNIP3P9-201ENST00000603714 553 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC005332.10-201ENST00000612725 619 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 DUSP12P1-201ENST00000612874 516 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC107871.2-201ENST00000612894 502 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC072046.2-201ENST00000618366 268 ntBASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CPSF3Q9UKF6 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC092427.1-202ENST00000430569 476 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 GPR143P-201ENST00000434155 205 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RPL36AP6-201ENST00000435770 321 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RPL26P9-201ENST00000457466 433 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RPL36AP51-201ENST00000487216 318 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC117522.1-201ENST00000509821 380 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RNA5SP76-201ENST00000516277 87 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RNA5SP282-201ENST00000516355 108 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 RNU6-914P-201ENST00000516749 109 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AP003122.3-201ENST00000526316 255 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AP001646.1-201ENST00000527936 915 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC084851.1-201ENST00000529105 249 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms