Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18■□□□□ 0.47
AP4S1Q9Y587 SUDS3P1-201ENST00000505831 966 ntBASIC18■□□□□ 0.47
AP4S1Q9Y587 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18■□□□□ 0.47
AP4S1Q9Y587 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 FEM1AP3-201ENST00000403722 1741 ntBASIC18■□□□□ 0.47
AP4S1Q9Y587 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18■□□□□ 0.47
AP4S1Q9Y587 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18■□□□□ 0.47
AP4S1Q9Y587 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18■□□□□ 0.47
AP4S1Q9Y587 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
AP4S1Q9Y587 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18■□□□□ 0.47
AP4S1Q9Y587 AL162741.1-201ENST00000565563 1558 ntBASIC18■□□□□ 0.47
AP4S1Q9Y587 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 AC012313.1-201ENST00000593393 3059 ntBASIC17.99■□□□□ 0.47
AP4S1Q9Y587 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 AC083906.6-201ENST00000641366 219 ntBASIC17.99■□□□□ 0.47
AP4S1Q9Y587 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 ESPNP-201ENST00000270691 2015 ntBASIC17.99■□□□□ 0.47
AP4S1Q9Y587 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
AP4S1Q9Y587 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 PRORSD1P-202ENST00000563365 2154 ntBASIC17.98■□□□□ 0.47
AP4S1Q9Y587 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
AP4S1Q9Y587 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 TFP1-202ENST00000475455 1573 ntBASIC17.97■□□□□ 0.47
AP4S1Q9Y587 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.97■□□□□ 0.47
AP4S1Q9Y587 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms