Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT8P41-201ENST00000533985 1514 ntBASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 UNC93B5-201ENST00000530315 699 ntBASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 AC008403.3-201ENST00000598924 454 ntBASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMA1Q9UHB6 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 PRKY-204ENST00000533551 1019 ntBASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMA1Q9UHB6 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 AC104771.1-201ENST00000603335 964 ntBASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMA1Q9UHB6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 AC073592.3-201ENST00000625118 1834 ntBASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMA1Q9UHB6 NOC2LP1-202ENST00000452600 2235 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms