Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 CR769767.2-201ENST00000622735 460 ntBASIC19.83■□□□□ 0.77
LIMD1Q9UGP4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMD1Q9UGP4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 TSSC2-201ENST00000450217 709 ntBASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 KRT8P10-201ENST00000450021 1447 ntBASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMD1Q9UGP4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 KRT17P6-201ENST00000453795 1220 ntBASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 AP001271.2-201ENST00000624018 1556 ntBASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 BX119927.1-201ENST00000636596 1552 ntBASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMD1Q9UGP4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 BX276092.5-203ENST00000456199 560 ntBASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 RASA4DP-201ENST00000460726 1199 ntBASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 MIR4674-201ENST00000582457 87 ntBASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 AC011498.5-201ENST00000592027 486 ntBASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 AC016734.2-201ENST00000624325 1377 ntBASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMD1Q9UGP4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms