Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
CDT1Q9H211 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CDT1Q9H211 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CDT1Q9H211 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 AC116562.4-201ENST00000641316 2276 ntBASIC20.62■□□□□ 0.89
CDT1Q9H211 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.62■□□□□ 0.89
CDT1Q9H211 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDT1Q9H211 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 AC005332.7-201ENST00000614046 2005 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 GPAT2P1-201ENST00000444924 1672 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 FP475955.4-201ENST00000623131 1990 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.61■□□□□ 0.89
CDT1Q9H211 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CDT1Q9H211 MIR1224-201ENST00000408193 85 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 AC104076.2-201ENST00000448912 469 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.61■□□□□ 0.89
CDT1Q9H211 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 SLC25A24-204ENST00000569674 2357 ntBASIC20.61■□□□□ 0.89
CDT1Q9H211 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.61■□□□□ 0.89
CDT1Q9H211 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDT1Q9H211 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDT1Q9H211 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
CDT1Q9H211 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.6■□□□□ 0.89
CDT1Q9H211 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDT1Q9H211 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDT1Q9H211 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 AC141257.4-201ENST00000634557 245 ntBASIC20.6■□□□□ 0.89
CDT1Q9H211 AC136944.6-201ENST00000634818 245 ntBASIC20.6■□□□□ 0.89
CDT1Q9H211 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CDT1Q9H211 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.6■□□□□ 0.89
CDT1Q9H211 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDT1Q9H211 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CDT1Q9H211 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.59■□□□□ 0.89
CDT1Q9H211 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 AL023284.2-201ENST00000405850 579 ntBASIC20.59■□□□□ 0.89
CDT1Q9H211 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.59■□□□□ 0.89
CDT1Q9H211 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.59■□□□□ 0.89
CDT1Q9H211 AC010331.1-201ENST00000611423 582 ntBASIC20.59■□□□□ 0.89
CDT1Q9H211 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.59■□□□□ 0.89
CDT1Q9H211 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.59■□□□□ 0.89
CDT1Q9H211 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDT1Q9H211 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDT1Q9H211 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDT1Q9H211 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.58■□□□□ 0.89
CDT1Q9H211 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms