Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 AC007613.1-201ENST00000572811 2597 ntBASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 POM121L13P-201ENST00000422362 380 ntBASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM56Q9BRZ2 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 AL138781.2-201ENST00000617896 1843 ntBASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM56Q9BRZ2 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 RNA5SP413-201ENST00000516373 109 ntBASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM56Q9BRZ2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM56Q9BRZ2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms