Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NKX3-1Q99801 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 AL031598.1-201ENST00000561511 1773 ntBASIC16.59■□□□□ 0.25
NKX3-1Q99801 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.59■□□□□ 0.25
NKX3-1Q99801 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NKX3-1Q99801 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.58■□□□□ 0.25
NKX3-1Q99801 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
NKX3-1Q99801 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NKX3-1Q99801 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
NKX3-1Q99801 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
NKX3-1Q99801 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 GUSBP6-202ENST00000438529 1198 ntBASIC16.58■□□□□ 0.24
NKX3-1Q99801 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 AL512353.2-201ENST00000448759 1962 ntBASIC16.58■□□□□ 0.24
NKX3-1Q99801 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 AL390961.4-201ENST00000623958 2535 ntBASIC16.58■□□□□ 0.24
NKX3-1Q99801 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
NKX3-1Q99801 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NKX3-1Q99801 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.57■□□□□ 0.24
NKX3-1Q99801 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
NKX3-1Q99801 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms